Factsheet for Solyc01g009680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g090580.2.1
Solyc10g080660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Solyc10g080660.1.1	AT5G18110.1	11117257
AT3G45140.1	Solyc09g090580.2.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0559934-00	Rice	cytosol	30.02	68.21
CDY72550	Canola	cytosol	48.53	66.98
CDY07409	Canola	cytosol	57.79	66.15
CDY61034	Canola	cytosol	64.33	63.76
CDY70843	Canola	cytosol	17.61	61.9
CDY61881	Canola	cytosol	47.4	59.15
HORVU3Hr1G047210.1	Barley	cytosol	26.41	53.92
TraesCS7D01G029400.1	Wheat	cytosol	31.38	52.45
VIT_06s0004g01460.t01	Wine grape	plastid	68.85	51.0
Solyc01g006560.2.1	Tomato	plastid	97.29	47.78
TraesCS7A01G034900.1	Wheat	mitochondrion	30.25	45.73
Solyc09g055900.2.1	Tomato	cytosol	44.92	43.07
Os12t0560200-00	Rice	cytosol	9.48	42.42
Solyc01g006540.2.1	Tomato	plastid	84.88	41.96
TraesCS6B01G014400.1	Wheat	cytosol	56.21	41.43
Solyc12g011040.1.1	Tomato	nucleus, plastid	82.62	41.03
VIT_06s0004g01500.t01	Wine grape	cytosol	73.14	40.96
VIT_06s0004g01480.t01	Wine grape	cytosol	71.11	39.72
KRG89883	Soybean	cytosol, plastid	70.65	36.44
KRH29669	Soybean	plastid	73.59	36.18
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	69.07	35.62
VIT_06s0004g01510.t01	Wine grape	plastid	71.56	35.18
VIT_06s0004g01470.t01	Wine grape	cytosol	71.56	35.11
KRH29668	Soybean	nucleus	71.78	35.1
KRH24671	Soybean	cytosol, plastid	72.23	35.01
KRG89889	Soybean	cytosol, plastid	67.72	34.88
KRH17965	Soybean	plastid	70.2	33.88
CDX79416	Canola	plastid	68.62	33.63
KRH18682	Soybean	cytosol, mitochondrion	69.07	33.59
AT3G45140.1	Thale cress	plastid	67.72	33.48
CDX67920	Canola	plastid	67.95	33.3
Bra003526.1-P	Field mustard	plastid	67.72	33.19
KRG89888	Soybean	nucleus	67.27	33.0
CDY04196	Canola	plastid	66.14	32.96
CDX91565	Canola	plastid	66.14	32.56
Bra004057.1-P	Field mustard	cytosol	65.46	32.55
HORVU7Hr1G050680.1	Barley	peroxisome	49.66	32.16
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	37.02	32.09
Bra004060.1-P	Field mustard	plastid	65.01	32.04
CDY61036	Canola	plastid	63.88	31.83
Bra004059.1-P	Field mustard	plastid	61.4	31.41
OQU80925	Sorghum	cytosol	61.17	31.33
GSMUA_Achr3P11780_001	Banana	plastid	59.37	31.09
HORVU6Hr1G033600.1	Barley	plastid	62.53	30.92
KXG29701	Sorghum	plastid	63.88	30.86
Zm00001d053675_P001	Maize	plastid	62.98	30.83
TraesCS6B01G193400.1	Wheat	plastid	62.3	30.63
TraesCS6A01G166000.1	Wheat	golgi	62.08	30.52
GSMUA_Achr9P12470_001	Banana	plastid	58.01	30.49
TraesCS6D01G154600.1	Wheat	plastid	61.85	30.41
TraesCS4D01G347300.1	Wheat	cytosol	60.05	30.06
Zm00001d015852_P004	Maize	plastid	61.4	29.86
HORVU5Hr1G001180.1	Barley	plastid	62.08	29.54
Os02t0194700-01	Rice	plasma membrane	61.17	29.27
Os08t0508800-01	Rice	nucleus, plasma membrane	60.95	29.22
TraesCS5B01G006500.1	Wheat	plastid	60.72	28.99
TraesCS5D01G013400.1	Wheat	plastid	60.72	28.99
HORVU7Hr1G006320.4	Barley	plastid	60.5	28.91
TraesCS5A01G007900.1	Wheat	plastid	60.5	28.88
Os08t0509100-01	Rice	nucleus	61.17	28.8
TraesCS7B01G145200.1	Wheat	plastid	60.27	28.77
Os12t0559200-01	Rice	plastid	59.59	28.63
TraesCS7D01G244800.1	Wheat	plastid	60.05	28.54
TraesCS7A01G246200.1	Wheat	plastid	59.82	28.46
TraesCS5D01G041100.1	Wheat	plastid	60.27	28.25
TraesCS5B01G033000.1	Wheat	plastid	60.27	28.11
Bra022535.1-P	Field mustard	plastid	51.24	27.99
Zm00001d031449_P001	Maize	mitochondrion	60.05	27.82
TraesCS6D01G010100.1	Wheat	plastid	58.24	27.48
Bra004058.1-P	Field mustard	plastid	65.46	27.41
HORVU6Hr1G000510.1	Barley	plastid	57.56	27.36
CDY16339	Canola	plastid	46.73	27.2
Solyc03g122340.2.1	Tomato	cytosol	55.53	27.09
Solyc05g014790.2.1	Tomato	plastid	55.3	26.89
CDY07407	Canola	cytosol, plastid	66.14	26.71
Solyc09g075870.1.1	Tomato	cytosol	49.44	25.64
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	49.66	25.58
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	48.76	25.09
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	48.76	25.06
Solyc01g099200.2.1	Tomato	cytosol, plastid	47.4	24.97
Solyc01g099210.2.1	Tomato	cytosol	48.53	24.91
Solyc01g099180.2.1	Tomato	cytosol	46.73	24.24
Solyc09g075860.2.1	Tomato	cytosol, nucleus	47.63	24.06
TraesCS5A01G032800.1	Wheat	mitochondrion	46.5	23.98
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	46.28	23.89
Solyc01g099150.2.1	Tomato	nucleus	38.37	19.72
CDY61880	Canola	plastid	13.77	11.07
CDY70245	Canola	plastid	1.13	1.09
CDY07408	Canola	plastid	0.45	0.44
CDY70606	Canola	plastid	0.23	0.25
CDY61882	Canola	plastid	0.0	0.0
Solyc09g055890.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.245.10	Gene3D:3.10.450.60	MapMan:50.1.12	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR013819	UniProt:K4ATG3	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	PFAM:PF00305	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SUPFAM:SSF48484	EnsemblPlantsGene:Solyc01g009680.2
EnsemblPlants:Solyc01g009680.2.1	UniParc:UPI0002763739	SEG:seg	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:K4ATG3]

Coordinates

chr1:+:3967794..3971463

Molecular Weight (calculated)

50808.3 Da

IEP (calculated)

5.584

GRAVY (calculated)

-0.353

Length

443 amino acids

Sequence
(BLAST)

001: MQAVQQKKLF ILDYHDFLLP FVNKVNELKG TVLYGSRTLF YLTPNGTLRP LAIELTRPPV DDKPQWKQVY CPTWYATGAW LWRIAKAHVL AHDSGYHQLV
101: SHWLRTHCCT EPYIIASNRQ LSAMHPIYRL LFPHFRYTME INGTAREALI NANGVIESSF SPGKYSMELS SVAYDLHWRF DREALPEDLI SRGLAEENPN
201: APYVLRLTIE DYPSASDGLV WDILKQWVTN YVNHYYPQAK LIESDEELQA WWLEIKNVGH GDKKDEPWWP ELKTPNDLIS IVTTIIWVTS GHHAAVNFGQ
301: YSYAGYFPNR PTIARSKMPT EDPTDEEWED FLNKPEEALL KCFPSQLQAT KVIAVLDVLS NHSPDEEYIG TNIEPFWKDE PVINAAFEVF SGKLKELEGI
401: IDARNADCNL KNRNGAGVMP YELLKPFSER GITGKGVPYS ISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.