CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70795
CDX74645
CDX78777
CDX84118
CDY02645
CDY06456
CDY33686
CDY38487
CDY38545
CDY45630
CDY49143
CDY49364
CDY53257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	CDX70795	AT5G18110.1	11117257
AT3G45140.1	CDX78777	AT5G18110.1	11117257
AT3G45140.1	CDY02645	AT5G18110.1	11117257
AT3G45140.1	CDY38487	AT5G18110.1	11117257
AT3G45140.1	CDY45630	AT5G18110.1	11117257
AT3G45140.1	CDY49143	AT5G18110.1	11117257
AT3G45140.1	CDY53257	AT5G18110.1	11117257
AT3G45140.1	CDX74645	AT5G35620.1	11117257
AT3G45140.1	CDX84118	AT5G35620.1	11117257
AT3G45140.1	CDY06456	AT5G35620.1	11117257
AT3G45140.1	CDY33686	AT5G35620.1	11117257
AT3G45140.1	CDY38545	AT5G35620.1	11117257
AT3G45140.1	CDY49364	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67920	Canola	plastid	97.35	97.35
CDY70843	Canola	cytosol	12.72	91.27
CDY61034	Canola	cytosol	44.8	90.6
CDY72550	Canola	cytosol	31.97	90.03
CDY07409	Canola	cytosol	37.72	88.11
CDX91565	Canola	plastid	85.73	86.11
CDY16339	Canola	plastid	71.13	84.49
CDY61881	Canola	cytosol	32.41	82.54
CDY04196	Canola	plastid	78.98	80.31
CDY61036	Canola	plastid	78.1	79.42
AT3G45140.1	Thale cress	plastid	78.1	78.79
CDY61880	Canola	plastid	45.46	74.59
Os12t0559934-00	Rice	cytosol	15.82	73.33
CDY70245	Canola	plastid	36.5	72.05
CDY07408	Canola	plastid	35.95	70.96
Solyc01g009680.2.1	Tomato	plastid	33.63	68.62
CDY70606	Canola	plastid	29.76	68.1
VIT_13s0064g01500.t01	Wine grape	cytosol	18.69	67.6
CDY07407	Canola	cytosol, plastid	79.98	65.91
CDY61882	Canola	plastid	28.1	65.63
HORVU3Hr1G047210.1	Barley	cytosol	15.15	63.13
VIT_13s0064g01490.t01	Wine grape	cytosol	27.43	62.16
PGSC0003DMT400020118	Potato	cytosol	47.35	61.76
VIT_13s0064g01480.t01	Wine grape	plastid	56.86	56.92
Solyc01g006560.2.1	Tomato	plastid	56.19	56.32
PGSC0003DMT400081909	Potato	plastid	55.75	56.06
Solyc01g006540.2.1	Tomato	plastid	55.09	55.58
KRH29669	Soybean	plastid	55.31	55.49
KRG89883	Soybean	cytosol, plastid	51.44	54.13
KRH29668	Soybean	nucleus	53.98	53.86
KRH24671	Soybean	cytosol, plastid	54.2	53.61
Solyc12g011040.1.1	Tomato	nucleus, plastid	52.88	53.59
GSMUA_Achr9P12470_001	Banana	plastid	49.34	52.91
GSMUA_Achr3P11780_001	Banana	plastid	49.45	52.84
TraesCS7D01G029400.1	Wheat	cytosol	15.49	52.83
OQU80925	Sorghum	cytosol	49.78	52.02
KRH17965	Soybean	plastid	52.1	51.31
KRG89889	Soybean	cytosol, plastid	48.78	51.28
HORVU7Hr1G050680.1	Barley	peroxisome	38.72	51.17
Zm00001d053675_P001	Maize	plastid	51.0	50.94
TraesCS7A01G034900.1	Wheat	mitochondrion	16.48	50.85
CDY70916	Canola	cytosol	28.1	50.4
Zm00001d015852_P004	Maize	plastid	50.77	50.38
KRG89888	Soybean	nucleus	50.0	50.06
TraesCS6B01G014400.1	Wheat	cytosol	33.19	49.92
HORVU6Hr1G033600.1	Barley	plastid	49.45	49.89
KXG29701	Sorghum	plastid	50.44	49.73
Os02t0194700-01	Rice	plasma membrane	50.66	49.46
Os08t0508800-01	Rice	nucleus, plasma membrane	50.55	49.46
KRH18682	Soybean	cytosol, mitochondrion	49.78	49.4
TraesCS4D01G347300.1	Wheat	cytosol	48.34	49.38
TraesCS6A01G166000.1	Wheat	golgi	48.89	49.06
TraesCS6B01G193400.1	Wheat	plastid	48.78	48.95
TraesCS6D01G154600.1	Wheat	plastid	48.67	48.83
Os08t0509100-01	Rice	nucleus	50.55	48.57
TraesCS7B01G145200.1	Wheat	plastid	48.67	47.41
TraesCS7A01G246200.1	Wheat	plastid	48.78	47.37
TraesCS7D01G244800.1	Wheat	plastid	48.78	47.32
Zm00001d031449_P001	Maize	mitochondrion	49.78	47.07
TraesCS5A01G007900.1	Wheat	plastid	48.12	46.88
TraesCS5D01G013400.1	Wheat	plastid	48.12	46.88
TraesCS5B01G006500.1	Wheat	plastid	48.12	46.88
HORVU5Hr1G001180.1	Barley	plastid	48.12	46.72
HORVU6Hr1G000510.1	Barley	plastid	47.23	45.82
Os12t0559200-01	Rice	plastid	46.68	45.77
HORVU7Hr1G006320.4	Barley	plastid	46.35	45.2
Os12t0560200-00	Rice	cytosol	4.87	44.44
TraesCS5B01G033000.1	Wheat	plastid	46.68	44.42
TraesCS5D01G041100.1	Wheat	plastid	46.24	44.23
TraesCS6D01G010100.1	Wheat	plastid	44.47	42.81
CDY64617	Canola	cytosol	43.03	42.33
CDX81825	Canola	cytosol	43.03	42.33
CDY12655	Canola	plastid	42.59	42.17
CDY21750	Canola	cytosol, mitochondrion, plastid	42.81	42.11
CDX96769	Canola	cytosol	42.81	42.11
CDY07417	Canola	plastid	42.7	42.05
CDY49853	Canola	plastid	42.7	42.0
CDY51606	Canola	plastid	42.04	41.62
CDX82146	Canola	plastid	38.83	41.29
TraesCS5A01G032800.1	Wheat	mitochondrion	37.5	39.46
CDY46325	Canola	cytosol	37.83	38.78
CDY38326	Canola	cytosol	37.83	38.56
CDY64191	Canola	cytosol	38.05	37.93
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	42.81	34.55
CDY43490	Canola	cytosol, plasma membrane	40.49	30.42

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:A0A078CQE5	EnsemblPlants:CDX79416	ProteinID:CDX79416	ProteinID:CDX79416.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00132137001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniPathway:UPA00382	UniParc:UPI0004EF04C5	SEG:seg	:

Description

BnaC06g18870D

Coordinates

chrLK031817:+:2081521..2085488

Molecular Weight (calculated)

103010.0 Da

IEP (calculated)

5.457

GRAVY (calculated)

-0.474

Length

904 amino acids

Sequence
(BLAST)

001: MFCKESSSGL QTLSIAKSLS SPFHKPSPLI NPIWTGRRDK LCRPRNLGGR CKVTASQSNS EPKGNIVKEK VKKIKVKGYI QAEEGTVLEG LRWSRGLDDI
101: ADIAGRSLLV ELIAAENDTR TLMEKDPVED YAQRVWFDGE SADEKYECVF DMPEDFGTVG AIRIQNQHHR DIFIKEMELE LPSGSVTFSC HSWVAPKSVD
201: PAKRIFFSSK SYIPSATPET LKKLRKEELE TLQGKNRKKV GEFAKHERVY DYDVYNDVGD PDKDDELARP VIGGLSHPYP RRCKTGRKRS DKDPSTEKRE
301: GDFYVPRDEE FSTTKGTAFT GKAILAALPS VFTQVESILL DPKSPFPHFK SIEDLFDVGI NLPKDAGLLP MLPKLIKVIS EAQDDLLQFD PPILLNKDRF
401: SWIRDDEFAR QTLAGLNPYC IQLVTEWPLQ SKLDPAVYGD PNSLITWEIV EKEIRGVMSV DEALKNKRLF MLDYHDLLLP YVNKVRELDD TMLYASRTLF
501: FLSDDSTLRP VAIELTRPPD VNRPQWKQVF TPGYDATSCW LWKLAKTHVV AHDAGYHQLI SHWLRTHCCM EPYIIAANRQ LSAMHPIFRL LHPHFRYTME
601: INARARQSLV NAGGIIESCF WPGKYSLELS SDVYDKLWRF DREGLPADLI NRGLAVEDEK AEHGVRLTIP DYPFANDGLM LWDALKEWIT DYVNHYYPDA
701: GLITSDEELQ AWWSEVKNIG HGDKKDEPWW PELKTQDDLI GVATTIAWVA SGHHAAVNFG QYGYGGYFPN RPTTTRRRMP VEEPTEEELK EFYEEPEKVL
801: LKTFPSQKQA TQVMVTLDLL STHSPDEEYL GEEPEASWVD EPVIYAAYER FKGKLQYLEG VIDERNVNVS LKNRAGAGVV KYELLKPISE PGVTGMGVPY
901: SVSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.