CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70795
CDX74645
CDX78777
CDX84118
CDY02645
CDY06456
CDY33686
CDY38487
CDY38545
CDY45630
CDY49143
CDY49364
CDY53257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	CDX70795	AT5G18110.1	11117257
AT3G45140.1	CDX78777	AT5G18110.1	11117257
AT3G45140.1	CDY02645	AT5G18110.1	11117257
AT3G45140.1	CDY38487	AT5G18110.1	11117257
AT3G45140.1	CDY45630	AT5G18110.1	11117257
AT3G45140.1	CDY49143	AT5G18110.1	11117257
AT3G45140.1	CDY53257	AT5G18110.1	11117257
AT3G45140.1	CDX74645	AT5G35620.1	11117257
AT3G45140.1	CDX84118	AT5G35620.1	11117257
AT3G45140.1	CDY06456	AT5G35620.1	11117257
AT3G45140.1	CDY33686	AT5G35620.1	11117257
AT3G45140.1	CDY38545	AT5G35620.1	11117257
AT3G45140.1	CDY49364	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004060.1-P	Field mustard	plastid	98.54	97.44
CDY61034	Canola	cytosol	46.57	92.62
CDY70843	Canola	cytosol	13.05	92.06
CDY72550	Canola	cytosol	32.17	89.1
CDY04196	Canola	plastid	88.41	88.41
CDY07409	Canola	cytosol	38.47	88.37
CDY61881	Canola	cytosol	33.3	83.38
CDY61880	Canola	plastid	51.63	83.3
CDY07408	Canola	plastid	41.51	80.57
CDY70245	Canola	plastid	41.17	79.91
CDY70606	Canola	plastid	35.21	79.24
CDY61882	Canola	plastid	34.42	79.07
CDX79416	Canola	plastid	79.42	78.1
CDX91565	Canola	plastid	78.4	77.44
CDX67920	Canola	plastid	78.4	77.1
CDY16339	Canola	plastid	65.58	76.61
AT3G45140.1	Thale cress	plastid	74.13	73.55
Os12t0559934-00	Rice	cytosol	15.86	72.31
CDY07407	Canola	cytosol, plastid	85.71	69.46
Solyc01g009680.2.1	Tomato	plastid	31.83	63.88
HORVU3Hr1G047210.1	Barley	cytosol	15.41	63.13
VIT_13s0064g01500.t01	Wine grape	cytosol	17.66	62.8
VIT_13s0064g01490.t01	Wine grape	cytosol	28.12	62.66
PGSC0003DMT400020118	Potato	cytosol	44.77	57.43
VIT_13s0064g01480.t01	Wine grape	plastid	56.02	55.15
KRH29669	Soybean	plastid	54.33	53.61
PGSC0003DMT400081909	Potato	plastid	53.77	53.17
Solyc01g006540.2.1	Tomato	plastid	53.43	53.01
Solyc01g006560.2.1	Tomato	plastid	52.98	52.22
GSMUA_Achr9P12470_001	Banana	plastid	49.49	52.19
GSMUA_Achr3P11780_001	Banana	plastid	49.49	52.01
KRG89883	Soybean	cytosol, plastid	50.17	51.92
KRH29668	Soybean	nucleus	52.64	51.66
KRH24671	Soybean	cytosol, plastid	52.87	51.42
OQU80925	Sorghum	cytosol	49.27	50.64
KRG89889	Soybean	cytosol, plastid	48.26	49.88
Zm00001d053675_P001	Maize	plastid	50.62	49.72
Solyc12g011040.1.1	Tomato	nucleus, plastid	49.83	49.66
CDY70916	Canola	cytosol	28.01	49.4
Os02t0194700-01	Rice	plasma membrane	51.29	49.24
Zm00001d015852_P004	Maize	plastid	50.39	49.18
KXG29701	Sorghum	plastid	50.62	49.07
Os08t0508800-01	Rice	nucleus, plasma membrane	50.96	49.03
HORVU6Hr1G033600.1	Barley	plastid	49.38	49.0
HORVU7Hr1G050680.1	Barley	peroxisome	37.68	48.98
KRG89888	Soybean	nucleus	49.61	48.84
KRH17965	Soybean	plastid	50.06	48.47
TraesCS6D01G154600.1	Wheat	plastid	49.04	48.39
KRH18682	Soybean	cytosol, mitochondrion	49.38	48.19
TraesCS6A01G166000.1	Wheat	golgi	48.82	48.17
TraesCS6B01G193400.1	Wheat	plastid	48.59	47.95
Os08t0509100-01	Rice	nucleus	50.73	47.93
TraesCS4D01G347300.1	Wheat	cytosol	47.36	47.57
TraesCS6B01G014400.1	Wheat	cytosol	31.95	47.25
TraesCS7D01G029400.1	Wheat	cytosol	14.06	47.17
TraesCS7A01G246200.1	Wheat	plastid	48.59	46.4
TraesCS7D01G244800.1	Wheat	plastid	48.59	46.35
TraesCS7B01G145200.1	Wheat	plastid	48.14	46.12
Zm00001d031449_P001	Maize	mitochondrion	49.49	46.03
TraesCS7A01G034900.1	Wheat	mitochondrion	14.96	45.39
Os12t0559200-01	Rice	plastid	46.23	44.58
TraesCS5B01G006500.1	Wheat	plastid	46.46	44.5
TraesCS5D01G013400.1	Wheat	plastid	46.34	44.4
TraesCS5A01G007900.1	Wheat	plastid	46.34	44.4
HORVU5Hr1G001180.1	Barley	plastid	46.23	44.15
TraesCS5B01G033000.1	Wheat	plastid	46.01	43.05
HORVU6Hr1G000510.1	Barley	plastid	45.11	43.03
TraesCS5D01G041100.1	Wheat	plastid	45.67	42.96
HORVU7Hr1G006320.4	Barley	plastid	44.54	42.72
TraesCS6D01G010100.1	Wheat	plastid	44.21	41.85
CDY07417	Canola	plastid	42.86	41.5
Os12t0560200-00	Rice	cytosol	4.61	41.41
CDY12655	Canola	plastid	42.41	41.29
CDX82146	Canola	plastid	39.26	41.06
CDY49853	Canola	plastid	42.41	41.02
CDY64617	Canola	cytosol	42.29	40.91
CDX81825	Canola	cytosol	42.18	40.81
CDY51606	Canola	plastid	41.84	40.74
CDY21750	Canola	cytosol, mitochondrion, plastid	42.07	40.7
CDX96769	Canola	cytosol	41.96	40.59
CDY46325	Canola	cytosol	38.7	39.0
TraesCS5A01G032800.1	Wheat	mitochondrion	37.57	38.88
CDY38326	Canola	cytosol	38.7	38.78
CDY64191	Canola	cytosol	38.81	38.04
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	42.86	34.02
CDY43490	Canola	cytosol, plasma membrane	41.51	30.67

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:A0A078J7I5	UniProt:A0A078J7I5	EnsemblPlants:CDY61036	ProteinID:CDY61036	ProteinID:CDY61036.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00030463001	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniPathway:UPA00382
UniParc:UPI0004EEDDF3	SEG:seg	:	:	:	:

Description

BnaA07g38550DLipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A078J7I5]

Coordinates

chrLK033947:+:8735..12687

Molecular Weight (calculated)

101219.0 Da

IEP (calculated)

5.697

GRAVY (calculated)

-0.466

Length

889 amino acids

Sequence
(BLAST)

001: MFCREASSSL QTLSIANSLS SQFTKPSALI NSLSAGHRYK LCPRPNLRGR CTVTASKFDI NGKGKIVKDE VKKIKVKGTI TVLSEEKKKK GTIMAQEGLL
101: PSVGESLLVE LISAETDPRT PMEKDPVEDY AQRDGHDDQY LQCVFDMPED FGVVGAIRVV NLESKEIFLK EMKLEVPDGP VTFTFNSWVA PKSEDSTKRT
201: FFSNKSYLPL KTPEPLKQLR KEELETLQGK NREGDSEFKK FERVYDYDVY NDVGNPDKDP ELARPVLGGL SHPYPRRCKT GRKPCVIDPS TETRQKDFYV
301: PRDEEFSKVK GDAFTGTAAL AALPAALQQI EAFLLDPNMP FPHFKSIENL FEEGIEIPKD TGLFSLIPRI FKAIAAKAED ILLFESPILL DKDRFSWIRD
401: NEFARQTLAG LNPYCIQLVR EWPLKSKLDP AVYGDPNSLI TSEIVEREIK GVMSFDEALE NKRLFMLDYH DLLLPYVNKV RELDDSTLYA SRTLFFLNDD
501: STLRPVAIEL TRPQDKTRPQ WRHVFTPGYD ATSCWLWTLA KTHAISHDAG YHQLISHWLR THCSMEPYII AANRQLSAMH PIYRLLHPHF RYTMEINARA
601: RQSLVNAGGI IESCFWPGKY SLELSSDVYD KLWRFDREGL PADLISRGLA VEDETAEHGV RLTIPDYPFA NDGLMLWDAL KEWITDYVRS DEELKEWWNE
701: VKNIGHGDKK NEPWWPDLKT QDDLIGVVTT IAWVASGHHA AVNFGQYGYG GYFPNRPTTS RKKMPVEEPT EDELKEFYEE PEKTMLKTFP SKKQATTVMF
801: TLDLLSAHSP DEEYLGENPE ASWVHEPVIY AAYERFKGKL QYLEGVIDER NLNVSLKNRA GSGVVKYELL KPISGPGVTG MGVPYSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.