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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0262400-01
Os10t0467600-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G45140.1 Os03t0262400-01 AT5G18110.1 11117257
AT3G45140.1 Os10t0467600-01 AT5G35620.1 11117257
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU3Hr1G047210.1 Barley cytosol 69.74 62.67
CDY61034 Canola cytosol 73.33 31.99
VIT_13s0064g01490.t01 Wine grape cytosol 65.13 31.83
Solyc01g009680.2.1 Tomato plastid 68.21 30.02
TraesCS6B01G014400.1 Wheat cytosol 77.44 25.12
CDY07409 Canola cytosol 48.72 24.55
VIT_06s0004g01460.t01 Wine grape plastid 68.21 22.24
Os12t0559200-01 Rice plastid 100.0 21.15
CDY61881 Canola cytosol 34.87 19.15
PGSC0003DMT400020118 Potato cytosol 67.69 19.05
CDY16339 Canola plastid 71.28 18.27
HORVU6Hr1G000510.1 Barley plastid 82.56 17.27
HORVU7Hr1G006320.4 Barley plastid 82.05 17.26
TraesCS5D01G041100.1 Wheat plastid 83.59 17.25
TraesCS5B01G033000.1 Wheat plastid 83.59 17.16
TraesCS5B01G006500.1 Wheat plastid 80.0 16.81
VIT_06s0004g01480.t01 Wine grape cytosol 68.21 16.77
TraesCS5D01G013400.1 Wheat plastid 79.49 16.7
TraesCS5A01G007900.1 Wheat plastid 79.49 16.7
HORVU5Hr1G001180.1 Barley plastid 79.49 16.65
VIT_06s0004g01500.t01 Wine grape cytosol 67.18 16.56
CDY72550 Canola cytosol 27.18 16.51
TraesCS6D01G010100.1 Wheat plastid 77.95 16.19
Bra004059.1-P Field mustard plastid 71.79 16.17
CDY04196 Canola plastid 72.82 15.97
VIT_06s0004g01450.t01 Wine grape cytosol, extracellular 70.26 15.95
VIT_13s0064g01480.t01 Wine grape plastid 73.85 15.95
CDY61036 Canola plastid 72.31 15.86
CDX79416 Canola plastid 73.33 15.82
CDX67920 Canola plastid 72.82 15.71
Bra004060.1-P Field mustard plastid 72.31 15.68
Bra003526.1-P Field mustard plastid 72.31 15.6
CDX91565 Canola plastid 71.79 15.56
Bra004057.1-P Field mustard cytosol 70.77 15.49
AT3G45140.1 Thale cress plastid 70.26 15.29
KRH24671 Soybean cytosol, plastid 71.28 15.21
Solyc01g006560.2.1 Tomato plastid 70.26 15.19
Solyc12g011040.1.1 Tomato nucleus, plastid 69.23 15.13
KRH29668 Soybean nucleus 70.26 15.12
KRG89889 Soybean cytosol, plastid 65.13 14.77
VIT_06s0004g01510.t01 Wine grape plastid 68.21 14.76
Solyc01g006540.2.1 Tomato plastid 67.69 14.73
Os02t0194700-01 Rice plasma membrane 69.74 14.69
PGSC0003DMT400081909 Potato plastid 67.18 14.57
KRG89883 Soybean cytosol, plastid 64.1 14.55
KRH29669 Soybean plastid 67.18 14.54
Os08t0508800-01 Rice nucleus, plasma membrane 68.21 14.39
KRH17965 Soybean plastid 67.69 14.38
Os08t0509100-01 Rice nucleus 69.23 14.35
VIT_06s0004g01470.t01 Wine grape cytosol 66.15 14.29
KRH18682 Soybean cytosol, mitochondrion 65.64 14.05
KRG89888 Soybean nucleus 64.62 13.95
CDY61880 Canola plastid 38.46 13.61
Os04t0447100-01 Rice cytosol 54.36 13.32
Bra004058.1-P Field mustard plastid 70.77 13.04
TraesCS5A01G032800.1 Wheat mitochondrion 57.44 13.04
CDY07407 Canola cytosol, plastid 72.31 12.85
Os03t0179900-01 Rice plastid 54.36 11.55
Os05t0304600-01 Rice plastid 49.23 11.33
Os03t0699700-01 Rice cytosol, plastid 49.23 11.12
Os03t0700700-01 Rice cytosol, plasma membrane, plastid 48.21 10.72
Os03t0738600-01 Rice plasma membrane, plastid 46.15 10.34
Os11t0575600-01 Rice mitochondrion 44.62 10.02
Bra022535.1-P Field mustard plastid 38.46 9.25
TraesCS7D01G029400.1 Wheat cytosol 5.13 3.77
TraesCS7A01G034900.1 Wheat mitochondrion 4.1 2.73
CDY70245 Canola plastid 3.59 1.53
CDY07408 Canola plastid 3.08 1.31
Os12t0560200-00 Rice cytosol 0.0 0.0
Os03t0700400-00 Rice cytosol, plasma membrane 0.0 0.0
CDY70843 Canola cytosol 0.0 0.0
CDY70606 Canola plastid 0.0 0.0
CDY61882 Canola plastid 0.0 0.0
VIT_13s0064g01500.t01 Wine grape cytosol 0.0 0.0
Protein Annotations
Gene3D:1.20.245.10Gene3D:3.10.450.60MapMan:50.1.12UniProt:A0A0N7KU75ProteinID:BAT17634.1GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0016702
GO:GO:0046872GO:GO:0051213GO:GO:0055114InterPro:IPR013819InterPro:LipOaseInterPro:LipOase_C
InterPro:LipOase_CSInterPro:LipOase_C_sfInterPro:LipOase_Fe_BSEnsemblPlantsGene:Os12g0559934EnsemblPlants:Os12t0559934-00PFAM:PF00305
PRINTS:PR00087ScanProsite:PS00081ScanProsite:PS00711PFscan:PS51393PANTHER:PTHR11771PANTHER:PTHR11771:SF89
SUPFAM:SSF48484UniParc:UPI000393B43C::::
Description
Similar to Lipoxygenase. (Os12t0559934-00)
Coordinates
chr12:+:22934817..22935735
Molecular Weight (calculated)
22537.3 Da
IEP (calculated)
8.131
GRAVY (calculated)
-0.118
Length
195 amino acids
Sequence
(BLAST)
001: MTAEEAVEKK KLFMLDYHDV LLPFVHAVRE LDDTTLYASR TLFFLTEDGT LRPIAIELTR PKSPNTPQWR QVFTPGSSVA ASWLWQLAKT HVLAHDTGYH
101: QLVSHWLRTH CCVEPYVIAA NRRLSQMHPI YRLLHPHFRF TMEINAQARG MLINANGIIE SAFAPGKLCM ELSSAVYDKF WRFDMEALPA DLIRR
Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.