Factsheet for VIT_06s0004g01510.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01500.t01	Wine grape	cytosol	65.93	75.09
VIT_06s0004g01480.t01	Wine grape	cytosol	64.93	73.77
VIT_13s0064g01500.t01	Wine grape	cytosol	20.09	72.4
Solyc01g009680.2.1	Tomato	plastid	35.18	71.56
VIT_06s0004g01470.t01	Wine grape	cytosol	71.48	71.32
Os12t0559934-00	Rice	cytosol	14.76	68.21
VIT_13s0064g01490.t01	Wine grape	cytosol	30.19	68.17
PGSC0003DMT400020118	Potato	cytosol	51.94	67.53
VIT_06s0004g01460.t01	Wine grape	plastid	44.51	67.06
KRH29669	Soybean	plastid	66.04	66.04
VIT_13s0064g01480.t01	Wine grape	plastid	65.37	65.23
PGSC0003DMT400081909	Potato	plastid	64.93	65.07
Solyc01g006540.2.1	Tomato	plastid	64.37	64.73
HORVU3Hr1G047210.1	Barley	cytosol	15.54	64.52
KRH29668	Soybean	nucleus	64.48	64.13
KRH24671	Soybean	cytosol, plastid	64.26	63.35
Solyc01g006560.2.1	Tomato	plastid	63.04	62.97
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	59.38	62.28
GSMUA_Achr3P11780_001	Banana	plastid	57.49	61.23
Solyc12g011040.1.1	Tomato	nucleus, plastid	60.27	60.87
KRG89889	Soybean	cytosol, plastid	57.38	60.12
KRG89883	Soybean	cytosol, plastid	57.27	60.07
KRG89888	Soybean	nucleus	59.82	59.69
KRH17965	Soybean	plastid	60.04	58.93
GSMUA_Achr9P12470_001	Banana	plastid	54.27	58.01
KRH18682	Soybean	cytosol, mitochondrion	58.05	57.41
OQU80925	Sorghum	cytosol	55.05	57.34
HORVU6Hr1G033600.1	Barley	plastid	55.38	55.69
TraesCS6B01G193400.1	Wheat	plastid	54.94	54.94
TraesCS6A01G166000.1	Wheat	golgi	54.94	54.94
TraesCS6D01G154600.1	Wheat	plastid	54.83	54.83
Zm00001d053675_P001	Maize	plastid	54.72	54.48
Zm00001d015852_P004	Maize	plastid	54.83	54.23
KXG29701	Sorghum	plastid	55.16	54.2
VIT_00s0265g00170.t01	Wine grape	cytosol	30.3	54.06
Os02t0194700-01	Rice	plasma membrane	55.05	53.56
TraesCS7A01G034900.1	Wheat	mitochondrion	17.2	52.9
HORVU7Hr1G050680.1	Barley	peroxisome	39.96	52.63
Os08t0508800-01	Rice	nucleus, plasma membrane	53.83	52.49
TraesCS7D01G029400.1	Wheat	cytosol	15.43	52.45
TraesCS6B01G014400.1	Wheat	cytosol	34.85	52.25
Os08t0509100-01	Rice	nucleus	54.38	52.07
TraesCS7B01G145200.1	Wheat	plastid	53.61	52.05
TraesCS4D01G347300.1	Wheat	cytosol	51.05	51.98
TraesCS7A01G246200.1	Wheat	plastid	53.5	51.77
TraesCS7D01G244800.1	Wheat	plastid	53.5	51.72
Zm00001d031449_P001	Maize	mitochondrion	54.72	51.57
TraesCS5D01G013400.1	Wheat	plastid	51.39	49.89
HORVU5Hr1G001180.1	Barley	plastid	51.39	49.73
TraesCS5A01G007900.1	Wheat	plastid	51.17	49.68
TraesCS5B01G006500.1	Wheat	plastid	51.05	49.57
HORVU7Hr1G006320.4	Barley	plastid	49.17	47.79
TraesCS6D01G010100.1	Wheat	plastid	49.61	47.6
HORVU6Hr1G000510.1	Barley	plastid	49.17	47.53
Os12t0560200-00	Rice	cytosol	5.22	47.47
Os12t0559200-01	Rice	plastid	48.17	47.07
VIT_01s0010g02750.t01	Wine grape	plastid	47.06	46.09
TraesCS5D01G041100.1	Wheat	plastid	48.17	45.93
VIT_06s0004g01580.t01	Wine grape	cytosol	16.98	45.67
TraesCS5B01G033000.1	Wheat	plastid	47.95	45.47
VIT_14s0128g00780.t01	Wine grape	cytosol	43.17	45.29
VIT_09s0002g01080.t01	Wine grape	cytosol	45.62	44.34
VIT_14s0128g00790.t01	Wine grape	cytosol	42.29	43.84
VIT_05s0020g03170.t01	Wine grape	cytosol	41.73	42.92
TraesCS5A01G032800.1	Wheat	mitochondrion	38.29	40.16
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	27.75	39.19
VIT_07s0289g00010.t01	Wine grape	cytosol	19.87	37.53

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100243312	wikigene:100243312	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60
Gene3D:4.10.372.10	Gene3D:4.10.375.10	ProteinID:ACZ17391	ProteinID:ACZ17391.1	ProteinID:AFF57758	ProteinID:AFF57758.1
EMBL:AM430960	ProteinID:CAN80268	ProteinID:CAN80268.1	ProteinID:CBI16437	ProteinID:CBI16437.3	UniProt:D7SLA9
EMBL:FJ858255	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EMBL:JQ281905	EntrezGene:LOXA	wikigene:LOXA
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	TIGR:TC51909	TIGR:TC59834
TIGR:TC71102	UniParc:UPI00015C78BB	ArrayExpress:VIT_06s0004g01510	EnsemblPlantsGene:VIT_06s0004g01510	EnsemblPlants:VIT_06s0004g01510.t01	unigene:Vvi.1414
SEG:seg	:	:	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:D7SLA9]

Coordinates

chr6:-:1875241..1881867

Molecular Weight (calculated)

101688.0 Da

IEP (calculated)

6.553

GRAVY (calculated)

-0.361

Length

901 amino acids

Sequence
(BLAST)

001: MFKTQVHQSH TAPTFFLLNK PCIPGPGTAS FSVRPRPEFR KKYRNVRVGY VPANIKAVAS DTDTRKSVSV KATVTVKLTV GGFLSSLIGL SHGLDDVSDW
101: LGKTLLLEVV SSEVDPKTGL EKKPIGAYAH RAAEKDGEVT YESDFVIPDD FGEIGAVLVQ NEHHKEMYLR YIVLDGFPNG PIEFNCSSWV ASKFDDPQKR
201: VFFTNKSYLP LETPSGLKEI REKELVTLRG NGQGERKSYD RIYDYDVYDD LGDPDSSPEL TRPVLGGSKQ YPYPRRCRTG RPMSKIDPKA ETRSSTVYVP
301: RDEAFSDVKE LTFSTNTLYS ALHAVVPAIE SVITDTSLGF PLFTKIDELY NEGINVPNLK KHKVLQDILP RLVRAITNST DSLLQFETPQ LLLRDKFSWF
401: RDEEFSRQTL AGLNPYSIQL VKEWPLKSTL DPKIYGPPES AITTEIVERE IKGFMTVDEA LKQKKLFIID YHDILLPYVS EVRQIKGTTL YGSRALFFLG
501: PDNTLKPLAI ELVRPPMDGK PQWKQVFTPS WEATGSWLWK LAKTHFLAHD AGYHQLVSHW LRTHCVTEPY IIATNRQLSA MHPIYRLLHP HFRYTMEINA
601: LAREALINAD GIIESAFTPG KYSTEISSAA YGLQWRFDTQ GLPADLISRG IAVEDPSSPH GLKLAIPDYP FANDGLLLWD AIKEWVTDYV NFFYKDASMV
701: KSDAELQAWW TEIRTRGHED KKDETWWPDL KTPQDLIGIV TTMVWVTSGH HAAVNFGQYA YAGYFPNRPT IARTNLPSED PTEEGWRRFL HKPENELLAC
801: LPTQLQAAKV LTVLDVLSSH SPDEEYLGEH LEPAWGADPL IKAAFERFSG RLKEIEGIID ARNEDKNLKN RHGAGVVPYE LLKPFSGAGV TGKGVPYSIS
901: I

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.