Factsheet for VIT_07s0141g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0289g00010.t01	Wine grape	cytosol	72.26	96.65
KXG23911	Sorghum	cytosol, plastid	43.73	51.19
VIT_06s0004g01580.t01	Wine grape	cytosol	24.92	47.46
Solyc09g055890.2.1	Tomato	cytosol	25.86	44.47
GSMUA_Achr2P05850_001	Banana	cytosol	55.96	43.38
VIT_13s0064g01490.t01	Wine grape	cytosol	26.65	42.61
PGSC0003DMT400074324	Potato	cytosol	23.04	42.49
KRH07345	Soybean	cytosol, plastid	57.21	42.39
KRH66214	Soybean	cytosol	57.52	42.38
TraesCS1D01G215800.2	Wheat	cytosol	52.98	39.95
TraesCS1A01G212900.1	Wheat	cytosol	52.82	39.93
TraesCS1B01G226400.1	Wheat	cytosol	52.66	39.81
HORVU1Hr1G054390.4	Barley	cytosol	52.04	39.34
Os05t0304600-01	Rice	plastid	52.04	39.2
KXG24148	Sorghum	cytosol	52.51	39.09
Zm00001d041204_P001	Maize	cytosol	50.78	38.12
Solyc09g055900.2.1	Tomato	cytosol	27.27	37.66
PGSC0003DMT400074322	Potato	cytosol	25.86	37.33
VIT_14s0128g00780.t01	Wine grape	cytosol	48.75	36.2
VIT_14s0128g00790.t01	Wine grape	cytosol	47.96	35.21
VIT_05s0020g03170.t01	Wine grape	cytosol	46.08	33.56
VIT_06s0004g01480.t01	Wine grape	cytosol	37.15	29.89
VIT_06s0004g01500.t01	Wine grape	cytosol	36.99	29.84
VIT_00s0265g00170.t01	Wine grape	cytosol	22.41	28.32
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	38.09	28.29
VIT_06s0004g01510.t01	Wine grape	plastid	39.19	27.75
VIT_06s0004g01470.t01	Wine grape	cytosol	39.19	27.69
VIT_13s0064g01480.t01	Wine grape	plastid	38.71	27.35
VIT_01s0010g02750.t01	Wine grape	plastid	39.34	27.28
VIT_06s0004g01460.t01	Wine grape	plastid	25.39	27.09
VIT_09s0002g01080.t01	Wine grape	cytosol	38.4	26.43
VIT_13s0064g01500.t01	Wine grape	cytosol	2.98	7.6

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100256749	wikigene:100256749	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	MapMan:50.1.12	ProteinID:CCB59043	ProteinID:CCB59043.1	UniProt:F6HWH9	EMBL:FN596270
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	EntrezGene:LOXD	wikigene:LOXD	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF59	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI000210A1CB	ArrayExpress:VIT_07s0141g00340	EnsemblPlantsGene:VIT_07s0141g00340	EnsemblPlants:VIT_07s0141g00340.t01	RefSeq:XP_003634834
RefSeq:XP_003634834.1	SEG:seg	:	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6HWH9]

Coordinates

chr7_random:+:201678..209816

Molecular Weight (calculated)

72987.0 Da

IEP (calculated)

6.723

GRAVY (calculated)

-0.449

Length

638 amino acids

Sequence
(BLAST)

001: MAHQTLQQCF NVVPGKITCL QTRKEIITGE VFIVQRHGQS SCWISASVQL YSSTRLDPNT GKGKLSEKAY LKHGKSCEHN GTKITKYKVK FRVEPDFGIP
101: GAFLIKNEHK HKFFLQSATL EVPANQSIQF NCKSWIYPFT KTKTNRLFFS NTVYLPNETP EALDELRKEE LESLRGHGTG ERKEWDRVYE YDYYNDLGNP
201: DKGQEHVRPI LGGSDSYPYP RRGRTGRPCC NQDPLTESRP TKFNLDIYVP PDERFSPKKL SEFIENSVQA IVHFPLPEAQ SIDEQESNSF ESLEEIKDIF
301: SRHKRQGVEG WIAEELKSLV SDDLFKEIKE ASKKDPMKFP LPKIIEENEL AWKDDEEFAR QMLSGVNPTV IKGLEVFPPQ SRNGVWSSIK ASHIQHNLDG
401: LTIAEAMNQW RILILDHHDY LLPFLNRINT KGICVYASRT LLFLRDDHTL KLLAIELSLP GSSADMEINR VFLPTTQGTE AALWLLAKAH VAVNDSAYHQ
501: LISHWLNTHA VVEPFIIATR RQLSVMHPVH RLLDPHFKDT MHINALSRSI IINSGGILEK ILFTQEISME LSSAIYRDWR FDEQGLPADL IKRGLALKDP
601: DNPTGVYPLL EDYPYGADGL EIWTAIKTWV TDFYGGIH

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.