Factsheet for GSMUA_Achr2P05850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G226400.1	Wheat	cytosol	64.16	62.56
TraesCS1D01G215800.2	Wheat	cytosol	64.03	62.29
HORVU1Hr1G054390.4	Barley	cytosol	63.67	62.09
TraesCS1A01G212900.1	Wheat	cytosol	63.55	61.97
PGSC0003DMT400074322	Potato	cytosol	33.05	61.54
Os05t0304600-01	Rice	plastid	62.7	60.92
KXG24148	Sorghum	cytosol	63.06	60.56
Solyc09g055900.2.1	Tomato	cytosol	33.78	60.17
Zm00001d041204_P001	Maize	cytosol	61.97	60.0
KXG23911	Sorghum	cytosol, plastid	37.79	57.06
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	43.38	55.96
VIT_07s0289g00010.t01	Wine grape	cytosol	30.26	52.2
KRH66214	Soybean	cytosol	53.46	50.81
KRH07345	Soybean	cytosol, plastid	53.1	50.75
GSMUA_AchrUn_...	Banana	cytosol	46.42	48.72
GSMUA_Achr1P22970_001	Banana	cytosol	48.97	47.64
GSMUA_AchrUn_...	Banana	cytosol	48.48	46.67
GSMUA_Achr1P24370_001	Banana	cytosol	47.27	45.93
GSMUA_Achr6P25110_001	Banana	cytosol	43.26	44.84
GSMUA_Achr6P25090_001	Banana	cytosol	44.35	43.56
GSMUA_Achr9P19250_001	Banana	plasma membrane	48.97	42.38
GSMUA_Achr8P22700_001	Banana	plastid	40.1	38.92
GSMUA_Achr6P25080_001	Banana	cytosol	36.45	38.71
GSMUA_Achr3P11780_001	Banana	plastid	39.61	38.53
GSMUA_Achr9P12470_001	Banana	plastid	39.13	38.2
GSMUA_Achr9P16020_001	Banana	plastid	40.58	38.13
Solyc09g055890.2.1	Tomato	cytosol	17.13	38.01
PGSC0003DMT400074324	Potato	cytosol	15.92	37.86
GSMUA_Achr3P07870_001	Banana	plastid	40.34	37.77
GSMUA_Achr10P...	Banana	cytosol	38.88	36.36
GSMUA_Achr6P28450_001	Banana	plastid	38.4	36.32
GSMUA_Achr6P25100_001	Banana	cytosol	35.97	2.46

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.375.10	MapMan:50.1.12	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr2G05850_001	EnsemblPlants:GSMUA_Achr2P05850_001	EnsemblPlants:GSMUA_Achr2T05850_001
InterPro:IPR001024	InterPro:IPR013819	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	UniProt:M0S5H6	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF59	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI0002958C70	:	:	:	:	:

Description

Lipoxygenase A [Source:GMGC_GENE;Acc:GSMUA_Achr2G05850_001]

Coordinates

chr2:-:10788052..10791226

Molecular Weight (calculated)

93605.2 Da

IEP (calculated)

7.312

GRAVY (calculated)

-0.437

Length

823 amino acids

Sequence
(BLAST)

001: MLQDCWDNLR QKVIHHLNLL AGYETQPVLR GEVVVYRTSG RSNPAKSTAI SLYSITRADE NTGFGKLSRE ASLRNGKKTK HDGVETTTYD VVFYLEADFG
101: TPGAIAVKNR GRREFLLKSV TLEVSENRSV HFDCNSWVYP IIKTNVDRLF FANTSYLPSQ TPAALQSLRQ EELASLRGNG RGERKEWERI YDYDRYNDLG
201: DPDKGLHHER PILGGTRSYP YPRRCRTGRP LSNQDRATET RKKIINLDFY VPPDDRFSPV KLSEFISNSI RAIVHFVIPE VKSVFEGSIR NFESFGQMRK
301: DLYSMKENPL KFPIPEVIAT DENAWMSDEE FGRETLAGLN PAVIRCLERF PPVGRGGKVS SITASHIEKN LEGLSADQAV ELRRIFILDH HDYIMQYLRR
401: INEQGVCVYA SRTLLFLRHD QTLKPLAIEL SLPGDGKGAE INRVFLPASQ GGERALWQLA KTHVAVNDSG HHQLISHWLH THAAVEPFII ATRRQLSAMH
501: PIYKLLDPHF KDTMHINSLA RSILLNAGGI LEMTMFPGKF ALEMSSAIYR NWRFREQALP LDLLKRGIAL EDPGEPSGVR LRFEDYPYAI DGLDVWVAIK
601: TWVTNYCAYF YPDDRSVASD VEIQSWWHEV RTIGHGDKRN DEDGCWLPLD SVANLSQTLT TLIWIASALH ASLNFGQFAY AGYPPNRPTR CRKFIPHEGT
701: PEFAEYLRDP DKYFLEMVPD RFTTTLGLAL IEVLSGHTAD EVYLGQRASS EWTDDSHVLH MFQQFGDDLR KVEKRIEERN GNRGLKNRCG PAQVPYTLLY
801: PDTSNLGAEK GVTGRGIPNS VSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.