Factsheet for GSMUA_Achr3P07870_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P16020_001	Banana	plastid	87.71	88.01
GSMUA_Achr8P22700_001	Banana	plastid	82.03	85.02
Os04t0447100-01	Rice	cytosol	66.78	73.74
TraesCS2D01G313400.1	Wheat	plastid	71.22	68.79
TraesCS2B01G333600.1	Wheat	plastid	71.44	68.48
EES10882	Sorghum	plastid	70.88	67.42
TraesCS2A01G315100.2	Wheat	plastid	71.1	66.49
Zm00001d003533_P001	Maize	plastid	70.65	65.99
Zm00001d025524_P001	Maize	plastid	69.74	65.98
GSMUA_Achr10P...	Banana	cytosol	65.64	65.57
VIT_00s0265g00170.t01	Wine grape	cytosol	37.2	64.75
Solyc03g122340.2.1	Tomato	cytosol	65.42	63.33
KRH06197	Soybean	nucleus	66.33	63.23
KRH47615	Soybean	nucleus	66.67	63.21
CDX82146	Canola	plastid	60.75	62.82
PGSC0003DMT400058933	Potato	plastid	65.19	62.69
CDX81825	Canola	cytosol	65.19	62.35
CDY21750	Canola	cytosol, mitochondrion, plastid	65.07	62.24
CDY64617	Canola	cytosol	64.96	62.13
AT1G17420.1	Thale cress	cytosol, plastid	64.85	62.02
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	64.85	62.02
VIT_09s0002g01080.t01	Wine grape	cytosol	65.19	61.81
CDX96769	Canola	cytosol	64.62	61.81
Bra016602.1-P	Field mustard	cytosol	64.62	61.81
AT1G72520.1	Thale cress	plastid	64.62	61.34
Bra008037.1-P	Field mustard	plastid	63.48	60.72
CDY49853	Canola	plastid	63.37	60.61
KRG97300	Soybean	plastid	61.77	60.4
KRH69027	Soybean	plastid	61.89	60.38
KRH10882	Soybean	cytosol	25.37	51.38
KRH50048	Soybean	cytosol	50.85	49.12
KRH21441	Soybean	cytosol	50.74	49.01
GSMUA_Achr6P28450_001	Banana	plastid	48.46	48.97
GSMUA_Achr9P12470_001	Banana	plastid	41.87	43.65
GSMUA_Achr1P22970_001	Banana	cytosol	41.18	42.79
GSMUA_AchrUn_...	Banana	cytosol	38.11	42.73
GSMUA_Achr3P11780_001	Banana	plastid	40.5	42.08
GSMUA_Achr6P25110_001	Banana	cytosol	37.2	41.18
GSMUA_AchrUn_...	Banana	cytosol	39.7	40.82
GSMUA_Achr1P24370_001	Banana	cytosol	39.14	40.61
GSMUA_Achr6P25090_001	Banana	cytosol	38.68	40.57
GSMUA_Achr2P05850_001	Banana	cytosol	37.77	40.34
GSMUA_Achr9P19250_001	Banana	plasma membrane	40.73	37.64
GSMUA_Achr6P25080_001	Banana	cytosol	31.63	35.87
GSMUA_Achr6P25100_001	Banana	cytosol	31.29	2.29

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G07870_001	EnsemblPlants:GSMUA_Achr3P07870_001
EnsemblPlants:GSMUA_Achr3T07870_001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M0SCQ4	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI0002958AC4	SEG:seg	:	:	:

Description

Putative lipoxygenase 5 [Source:GMGC_GENE;Acc:GSMUA_Achr3G07870_001]

Coordinates

chr3:-:5448493..5452335

Molecular Weight (calculated)

99120.5 Da

IEP (calculated)

7.589

GRAVY (calculated)

-0.375

Length

879 amino acids

Sequence
(BLAST)

001: MATSMEILAS SLLQRTPLLP SSRSPLLRGG EQSRLFLSPA CFPLKKRSSA AGRVVRAPVS AAILTERFVR VETEERPVRF KVRAAVTVRR KKKEDLMATV
101: ANQLDAFSDR IGRNVVLELV SAEIDLRTRK PKASNSAALR GWFEKKKAKA ERVVYTAEFT VDSSFGEPGA ITVLNRHQRE FFLESIVVEG FACGPVHFPC
201: NSWVQPTRIH PHKRVFFSNK PYLPSQTPPG LRELRQQELK ELRGDGKGER KLTDRIYDYD TYNDLGNPDR GIDFVRPTLG GEQMPYPRRL RTGRPPTITD
301: RHVESRVEDP LPMYVPRDER FEEGKQAMLT AGAQKAVLHN LVPLLVASFS PESHDFKAFH EVDNLFKEGL RLKQTLQDQL FHKIPLVSKI EESTEGHLRY
401: DTPHIITKDK FAWLRDDEFA RQVVAGINPV NIERLQVFPP VSKLDPAIYG PPESAIKEEH IISHLNGMSL QQAVEANKLF MLDFHDVYLP FLDRINAQDG
501: RKAYGTRTIF LLTESGTLKP IAIELSLPPV RPGDARAKRV LTPPTDATSN WLWQLAKAHV CSNDAGVHQL VNHWLKTHAC IEPFILAAHR QLSAMHPIFK
601: LLKPHMRYTL EVNALARQIL INGGGVIESG FTPGPVCMEI SAAAYRNHWR FDQEGLPADL IRRQAGMAVE DPTQPHGLRL VIEDYPYATD GLLLWSAIQS
701: WVETYVAAYY PDDESIQSDY ELQSWYAEAH AALNFGQYPL GGYIPNRPPV LRRLIPVEGD PEYEHFRSDP AKFFLSALPN LTQATTFMTV IDTLSTHSVD
801: EEYLGERPDP YTWTGDGEMV EAFHEFASEV RRAESEIARR NADPARRNRC GAGVLPYELM APSSGPGITC RGVPNSVTI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.