CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	KRG98502	AT4G26630.1	25387881
AT1G17420.1	KRG98507	AT4G26630.1	25387881
AT1G17420.1	KRH46360	AT4G26630.1	25387881
AT1G17420.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47615	Soybean	nucleus	98.16	97.63
KRH69027	Soybean	plastid	77.22	79.02
KRG97300	Soybean	plastid	77.01	78.98
KRH30640	Soybean	cytosol	15.73	77.54
Solyc03g122340.2.1	Tomato	cytosol	75.7	76.87
PGSC0003DMT400058933	Potato	plastid	75.92	76.59
AT1G72520.1	Thale cress	plastid	72.99	72.68
AT1G17420.1	Thale cress	cytosol, plastid	72.34	72.58
CDX81825	Canola	cytosol	72.23	72.47
CDY21750	Canola	cytosol, mitochondrion, plastid	72.02	72.25
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	71.8	72.03
CDY64617	Canola	cytosol	71.69	71.93
VIT_09s0002g01080.t01	Wine grape	cytosol	72.23	71.84
Bra016602.1-P	Field mustard	cytosol	71.58	71.82
CDX96769	Canola	cytosol	71.48	71.71
CDX82146	Canola	plastid	65.4	70.94
CDY49853	Canola	plastid	70.07	70.29
Bra008037.1-P	Field mustard	plastid	70.07	70.29
HORVU5Hr1G055110.2	Barley	mitochondrion	25.6	66.86
GSMUA_Achr3P07870_001	Banana	plastid	63.23	66.33
GSMUA_Achr9P16020_001	Banana	plastid	63.02	66.32
GSMUA_Achr10P...	Banana	cytosol	63.02	66.02
GSMUA_Achr8P22700_001	Banana	plastid	60.41	65.68
Os04t0447100-01	Rice	cytosol	54.77	63.44
Os03t0179900-01	Rice	plastid	62.58	62.85
TraesCS4B01G295200.1	Wheat	plastid	61.93	61.86
EER95400	Sorghum	mitochondrion	61.93	61.8
HORVU4Hr1G076570.6	Barley	cytosol, plastid	61.17	61.57
TraesCS4A01G009400.1	Wheat	plastid	61.28	61.21
TraesCS4D01G294100.1	Wheat	plastid	61.06	61.06
TraesCS2D01G313400.1	Wheat	plastid	58.24	59.01
TraesCS2B01G333600.1	Wheat	plastid	58.68	59.0
Zm00001d027893_P001	Maize	plastid	61.61	58.68
EES10882	Sorghum	plastid	58.57	58.44
TraesCS2A01G315100.2	Wheat	plastid	58.57	57.45
KRH10882	Soybean	cytosol	26.9	57.14
Zm00001d003533_P001	Maize	plastid	58.24	57.07
Zm00001d025524_P001	Maize	plastid	57.16	56.73
KRH21441	Soybean	cytosol	53.36	54.07
KRH42646	Soybean	plastid	53.36	53.42
KRH50048	Soybean	cytosol	52.39	53.08
KRH24671	Soybean	cytosol, plastid	47.4	47.81
KRH29668	Soybean	nucleus	46.64	47.46
KRH35534	Soybean	cytosol	22.99	47.32
KRG89889	Soybean	cytosol, plastid	43.93	47.09
KRG89883	Soybean	cytosol, plastid	43.38	46.57
KRH29669	Soybean	plastid	45.23	46.28
KRH17965	Soybean	plastid	45.66	45.86
KRG89888	Soybean	nucleus	44.36	45.29
KRH16725	Soybean	cytosol	11.28	45.02
KRH18682	Soybean	cytosol, mitochondrion	44.25	44.79
KRH44093	Soybean	endoplasmic reticulum	41.0	44.68
KRH44090	Soybean	endoplasmic reticulum	41.54	44.53
KRH68548	Soybean	cytosol	41.32	44.41
KRH47522	Soybean	endoplasmic reticulum, nucleus	41.65	44.39
KRH23266	Soybean	cytosol	39.7	44.31
KRH33939	Soybean	cytosol, endoplasmic reticulum	41.54	44.28
KRH47066	Soybean	endoplasmic reticulum, nucleus	41.21	44.24
KRH10050	Soybean	endoplasmic reticulum	41.11	44.22
KRH47067	Soybean	endoplasmic reticulum	41.32	44.1
KRH44094	Soybean	endoplasmic reticulum	41.43	44.06
KRH44095	Soybean	endoplasmic reticulum	41.32	44.0
KRH23265	Soybean	endoplasmic reticulum, nucleus	41.11	43.76
KRH10051	Soybean	endoplasmic reticulum, nucleus	40.56	43.69
KRH44097	Soybean	cytosol, endoplasmic reticulum	40.89	43.43
KRH47525	Soybean	endoplasmic reticulum	40.89	43.43
KRH23268	Soybean	endoplasmic reticulum	39.91	43.14
KRH57987	Soybean	cytosol	12.04	43.02
KRH47069	Soybean	endoplasmic reticulum	21.15	42.86
KRG91271	Soybean	cytosol	39.8	42.77
KRH10053	Soybean	endoplasmic reticulum	39.48	42.67
KRH62399	Soybean	cytosol, endoplasmic reticulum	10.85	42.37
KRH23269	Soybean	endoplasmic reticulum	37.64	42.21
KRH44092	Soybean	nucleus	39.05	42.01
KRH62403	Soybean	cytosol, endoplasmic reticulum	10.2	41.41
KRH47064	Soybean	endoplasmic reticulum	25.05	40.53
KRH13357	Soybean	endoplasmic reticulum	10.41	39.67
KRH07345	Soybean	cytosol, plastid	36.44	39.02
KRH66214	Soybean	cytosol	36.55	38.91
KRG88464	Soybean	cytosol	18.55	37.5

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100791000	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02009817	EnsemblPlantsGene:GLYMA_16G008700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1MK14	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRH06197
ProteinID:KRH06197	ProteinID:KRH06197.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000233AEF6	SEG:seg

Description

hypothetical protein

Coordinates

chr16:-:735622..742337

Molecular Weight (calculated)

104019.0 Da

IEP (calculated)

7.377

GRAVY (calculated)

-0.400

Length

922 amino acids

Sequence
(BLAST)

001: MALTKQIMGS SLLERSMFVP SSSSPSSFFN STRFLVPLEN KRVVRMKRAA KFPVAAISED LMKGSSSSPS SSSSSSSVST EKPVKFKVRA VITVRNKIKE
101: DFKETIVKHI DALTDRIGRN VVLELVSTEI DPKTKSAKKS NEAVLKDWSK KSNLKAERVN YTAEFIVDSS FGEPGAITVT NKHQKEFFLE SITIEGFASG
201: PVHFPCNSWV QSRKDLPGKR IFFSNKPYLP GDTPAGLRLL REKELRNLRG DGKGVRNLSD RIYDYDIYND LGNPDKGIEL ARPNLGGSDM YPYPRRCRTG
301: REPSDTDMYA ESRVEKPLPM YVPRDERFEE SKQNTFTVKR LKAVLHNLIP GLKASLSSSN QDFNEFSDVD GLYSEGLLIK LGWGLQDDVL KKIPFVSKIQ
401: ESSQGLLKYD TPKIISKDKF AWLRDDEFAR QAIAGVNPVN IERLQVFPPV SKLDPEIYGP QESALKEEHI LNQLNGMTVQ EAINENKLFM IDYHDIYLPF
501: LEGINALDGR KSYATRTIFF LTPRSTLKPV AIELSLPHAG PNSRSKRVVT PPVDATTNWM WQLAKAHVCS NDAGVHQLVN HWLRTHANLE PFILAAHRQL
601: SAMHPIFKLL DPHMRYTLEI NTLARQSLIH ADGIIENCFT PGRYAMEISS AAYKNFWRFD MDSLPADLIR RGMAVADPTQ PHGLKLILED YPYAADGILI
701: WSAIEDWVRT YVNHYYPHSS LICNDKELQS WYSESINVGH ADLRHENWWP TLNNSEDLVS ILSTLIWNAS AQHAALNFGQ YPYGGYVPNR PPLMRRLIPE
801: EGDPEYASFI ADPQKYFLNA LPSLLQATKF MAVVDTLSTH SPDEEYLGER QQPSIWSGDA EIVEAFYDFS AKVQQIEKVI DGRNLDRTLR NRCGAGVLPY
901: ELLAPSSEPG VTCRGVPNSV ST

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.