CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10051	Soybean	endoplasmic reticulum, nucleus	95.01	91.24
KRH23268	Soybean	endoplasmic reticulum	89.29	86.05
KRH10053	Soybean	endoplasmic reticulum	89.05	85.81
KRH62403	Soybean	cytosol, endoplasmic reticulum	22.75	82.38
KRH62399	Soybean	cytosol, endoplasmic reticulum	21.53	75.0
KRH47069	Soybean	endoplasmic reticulum	39.9	72.09
KRH10050	Soybean	endoplasmic reticulum	72.75	69.78
KRH44097	Soybean	cytosol, endoplasmic reticulum	73.24	69.35
KRH44095	Soybean	endoplasmic reticulum	72.99	69.28
KRH16725	Soybean	cytosol	19.46	69.26
KRH57987	Soybean	cytosol	21.17	67.44
KRH47522	Soybean	endoplasmic reticulum, nucleus	67.15	63.81
KRH47067	Soybean	endoplasmic reticulum	66.79	63.54
KRH47064	Soybean	endoplasmic reticulum	43.92	63.33
KRH23265	Soybean	endoplasmic reticulum, nucleus	66.67	63.28
KRH47066	Soybean	endoplasmic reticulum, nucleus	65.94	63.1
KRH44090	Soybean	endoplasmic reticulum	65.69	62.79
KRH44094	Soybean	endoplasmic reticulum	65.94	62.51
KRH23266	Soybean	cytosol	62.77	62.47
KRH44093	Soybean	endoplasmic reticulum	63.26	61.47
KRH13357	Soybean	endoplasmic reticulum	18.0	61.16
KRH47525	Soybean	endoplasmic reticulum	63.99	60.6
Os03t0700400-00	Rice	cytosol, plasma membrane	8.88	57.94
KRH68548	Soybean	cytosol	59.37	56.88
KRH35534	Soybean	cytosol	29.68	54.46
GSMUA_AchrUn_...	Banana	cytosol	51.58	54.08
KRH33939	Soybean	cytosol, endoplasmic reticulum	56.81	53.99
GSMUA_AchrUn_...	Banana	cytosol	56.08	53.92
TraesCS4A01G359800.1	Wheat	cytosol	34.67	53.67
GSMUA_Achr1P22970_001	Banana	cytosol	54.5	52.96
GSMUA_Achr1P24370_001	Banana	cytosol	54.5	52.89
KRH44092	Soybean	nucleus	54.5	52.28
KRG91271	Soybean	cytosol	53.77	51.52
Zm00001d033623_P003	Maize	cytosol	54.26	51.44
GSMUA_Achr6P25110_001	Banana	cytosol	49.27	51.01
EER93612	Sorghum	cytosol	53.53	50.81
TraesCS5A01G378800.2	Wheat	cytosol	48.05	50.77
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	54.14	50.74
Os03t0699700-01	Rice	cytosol, plastid	53.16	50.64
GSMUA_Achr6P25090_001	Banana	cytosol	51.34	50.36
EES04025	Sorghum	cytosol	53.04	50.23
TraesCS5B01G382600.1	Wheat	cytosol	52.43	50.06
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	52.31	49.94
Os03t0738600-01	Rice	plasma membrane, plastid	52.68	49.77
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	53.53	49.61
TraesCS5B01G382400.1	Wheat	cytosol, golgi	51.58	49.53
HORVU5Hr1G093770.1	Barley	cytosol	51.95	49.48
EER93611	Sorghum	cytosol	53.41	49.44
TraesCS4B01G037700.3	Wheat	cytosol, golgi	51.7	49.36
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	51.82	49.31
TraesCS5A01G378700.1	Wheat	cytosol	51.82	49.31
TraesCS5A01G378900.1	Wheat	cytosol	51.82	49.31
TraesCS5B01G382300.1	Wheat	cytosol, unclear	51.82	49.31
TraesCS4D01G035200.1	Wheat	cytosol	49.63	49.22
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	51.58	49.07
Zm00001d042541_P002	Maize	cytosol	52.55	48.87
Zm00001d033624_P001	Maize	cytosol	52.55	48.7
EES04028	Sorghum	cytosol	51.58	48.57
KXG37783	Sorghum	cytosol	52.55	48.38
GSMUA_Achr9P19250_001	Banana	plasma membrane	55.84	48.27
Zm00001d042540_P008	Maize	cytosol	52.19	48.09
TraesCS4D01G035100.1	Wheat	cytosol	51.34	48.06
TraesCS4A01G275900.1	Wheat	cytosol, unclear	51.22	47.95
TraesCS4B01G037800.1	Wheat	cytosol	51.22	47.95
TraesCS5D01G388800.1	Wheat	cytosol	52.19	47.83
KRG88464	Soybean	cytosol	26.52	47.81
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	50.97	47.72
TraesCS5A01G379000.1	Wheat	nucleus, unclear	44.53	47.53
GSMUA_Achr6P25080_001	Banana	cytosol	44.77	47.48
TraesCS5D01G513100.1	Wheat	cytosol	50.0	47.35
TraesCS4A01G275800.1	Wheat	cytosol	13.75	47.28
TraesCS3B01G602500.1	Wheat	cytosol	50.12	46.77
TraesCS6B01G160400.1	Wheat	mitochondrion	49.51	46.62
HORVU5Hr1G117110.1	Barley	cytosol	50.24	46.56
TraesCS3B01G605700.1	Wheat	cytosol	50.0	46.44
TraesCS6A01G132200.1	Wheat	mitochondrion	49.27	46.39
TraesCS6A01G132500.1	Wheat	mitochondrion	49.27	46.39
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	27.37	46.11
TraesCS6B01G395700.1	Wheat	cytosol	44.65	45.2
TraesCS6D01G121900.1	Wheat	mitochondrion	24.33	44.74
Os11t0575600-01	Rice	mitochondrion	46.84	44.35
TraesCS6D01G122000.1	Wheat	cytosol	16.67	44.19
KRG89889	Soybean	cytosol, plastid	41.24	39.42
KRG89883	Soybean	cytosol, plastid	41.0	39.23
KRH07345	Soybean	cytosol, plastid	40.88	39.02
KRH66214	Soybean	cytosol	41.0	38.91
KRH69027	Soybean	plastid	42.46	38.73
KRG97300	Soybean	plastid	41.97	38.38
KRG89888	Soybean	nucleus	41.85	38.1
KRH29668	Soybean	nucleus	41.85	37.97
KRH29669	Soybean	plastid	41.48	37.85
KRH17965	Soybean	plastid	42.09	37.69
KRH47615	Soybean	nucleus	42.46	37.65
KRH06197	Soybean	nucleus	42.21	37.64
KRH42646	Soybean	plastid	41.85	37.35
KRH18682	Soybean	cytosol, mitochondrion	41.36	37.32
KRH24671	Soybean	cytosol, plastid	41.36	37.2
KRH10882	Soybean	cytosol	18.25	34.56
KRH30640	Soybean	cytosol	7.79	34.22
KRH21441	Soybean	cytosol	37.59	33.96
KRH50048	Soybean	cytosol	36.5	32.97
GSMUA_Achr6P25100_001	Banana	cytosol	43.8	3.0

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EMBL:ACUP02008459	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G347800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1M599	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRH23269
ProteinID:KRH23269	ProteinID:KRH23269.1	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00023CEDE9	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:43797692..43803266

Molecular Weight (calculated)

92798.7 Da

IEP (calculated)

6.996

GRAVY (calculated)

-0.315

Length

822 amino acids

Sequence
(BLAST)

001: MFGIIGGNKG HKIKGNLVIM RKNVLDINSI TSVKGVIGTG INIIGGVVDT VTALASHISI QLISATKADG HGKGKVGKAT NLRGQVSLPT LGAGEDAYDV
101: NFEWDSDFGI PGAFYIKNFM QVEFYLKSLT LEDIPNHGTI HFVCNSWVYN SKNYKTDRIF FANNTYLPSE TPAPLLKYRE EELKNVRGDG TGERKEWDRI
201: YDYDVYNDLG NPDSGDKYAR PVLGGSALPY PRRGRTGRGK TRKDPNSEKP SDFVYLPRDE AFGHLKSSDF LAFGIKSVSQ DVLPVLTDAF DGNILSLEFD
301: NFAEVRKLYE GGVTLPTNFL SKIAPIPVIK EIFRTDGEQF LKYPPPKVMQ VDKSAWMTDE EFARETIAGV NPNVIKILEE FPPRSKLDTQ AYGDHTCIIT
401: KQHLEPNLGG LTVEQAIQSK KLFILDHHDY LIPYLRKINA TTTKTYATRT IFFLKSDGTL TPLAIELSKP HPQGEEYGPV SEVYVPSSEG VEAYIWLLAK
501: AYVVVNDSCY HQLVSHWLNT HAVVEPFVIA TNRHLSVVHP IYKLLFPHYR DTMNINSLAR KSLVNADGII EKTFLWGRYA LEMSAVVYKD WVFTDQALPN
601: DLVKRGVAVK DPSAPHGVRL LIEDYPYASD GLEIWDAIKS WVQEYVSFYY KSDAAIQQDP ELQAWWKELV QVGHGDLKDK PWWQKMQTCE ELIEASATLI
701: WIASALHAAV NFGQYPYGGL ILNRPTISRR FMPEKGSAEY AALAKNPEKE FLKTITGKKE TLIDLTIIEI LSRHASDEFY LGERDGGDFW TSDAGPLEAF
801: KRLERSFKRL NISLYRRTRM RR

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.