CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62399	Soybean	cytosol, endoplasmic reticulum	81.94	78.81
KRH16725	Soybean	cytosol	74.89	73.59
KRH57987	Soybean	cytosol	80.18	70.54
KRH13357	Soybean	endoplasmic reticulum	63.0	59.09
TraesCS4A01G275800.1	Wheat	cytosol	44.05	41.84
TraesCS6D01G122000.1	Wheat	cytosol	52.86	38.71
KRH35534	Soybean	cytosol	52.86	26.79
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	54.63	25.41
KRH10053	Soybean	endoplasmic reticulum	92.95	24.74
TraesCS4A01G359800.1	Wheat	cytosol	56.83	24.29
KRH23268	Soybean	endoplasmic reticulum	90.75	24.15
KRH10051	Soybean	endoplasmic reticulum, nucleus	86.34	22.9
KRH23269	Soybean	endoplasmic reticulum	82.38	22.75
KRH44095	Soybean	endoplasmic reticulum	73.13	19.17
KRH44097	Soybean	cytosol, endoplasmic reticulum	72.69	19.01
KRH47069	Soybean	endoplasmic reticulum	37.0	18.46
KRH10050	Soybean	endoplasmic reticulum	69.6	18.44
TraesCS5A01G379000.1	Wheat	nucleus, unclear	57.27	16.88
KRH47066	Soybean	endoplasmic reticulum, nucleus	63.88	16.88
KRH44090	Soybean	endoplasmic reticulum	63.88	16.86
KRH47067	Soybean	endoplasmic reticulum	63.88	16.78
KRH23265	Soybean	endoplasmic reticulum, nucleus	63.88	16.74
KRH44094	Soybean	endoplasmic reticulum	63.88	16.72
KRH23266	Soybean	cytosol	59.47	16.34
TraesCS5A01G378800.2	Wheat	cytosol	55.95	16.32
KRH68548	Soybean	cytosol	61.23	16.2
KRH44093	Soybean	endoplasmic reticulum	60.35	16.19
KRH47525	Soybean	endoplasmic reticulum	61.67	16.13
Zm00001d033623_P003	Maize	cytosol	59.91	15.69
Os03t0699700-01	Rice	cytosol, plastid	59.47	15.64
KRH44092	Soybean	nucleus	58.59	15.52
KRH33939	Soybean	cytosol, endoplasmic reticulum	59.03	15.49
EER93612	Sorghum	cytosol	59.03	15.47
KRH47522	Soybean	endoplasmic reticulum, nucleus	58.59	15.38
TraesCS5B01G382600.1	Wheat	cytosol	58.15	15.33
GSMUA_Achr1P24370_001	Banana	cytosol	56.83	15.23
GSMUA_AchrUn_...	Banana	cytosol	57.27	15.2
EES04025	Sorghum	cytosol	57.71	15.09
TraesCS5B01G382400.1	Wheat	cytosol, golgi	56.83	15.07
HORVU5Hr1G093770.1	Barley	cytosol	57.27	15.06
TraesCS5A01G378900.1	Wheat	cytosol	57.27	15.05
TraesCS4D01G035200.1	Wheat	cytosol	54.63	14.96
Os03t0738600-01	Rice	plasma membrane, plastid	57.27	14.94
EES04028	Sorghum	cytosol	57.27	14.89
TraesCS5D01G513100.1	Wheat	cytosol	56.83	14.86
Zm00001d042541_P002	Maize	cytosol	57.71	14.82
TraesCS4A01G275900.1	Wheat	cytosol, unclear	57.27	14.81
TraesCS4D01G035100.1	Wheat	cytosol	57.27	14.81
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	55.95	14.7
TraesCS5B01G382300.1	Wheat	cytosol, unclear	55.95	14.7
TraesCS4B01G037800.1	Wheat	cytosol	56.83	14.69
Zm00001d042540_P008	Maize	cytosol	57.71	14.69
EER93611	Sorghum	cytosol	57.27	14.64
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	55.51	14.63
TraesCS5D01G388800.1	Wheat	cytosol	57.71	14.6
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	56.39	14.6
TraesCS5A01G378700.1	Wheat	cytosol	55.51	14.58
Zm00001d033624_P001	Maize	cytosol	56.83	14.54
GSMUA_AchrUn_...	Banana	cytosol	50.22	14.54
KRH10882	Soybean	cytosol	27.75	14.52
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	55.07	14.47
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	56.39	14.43
TraesCS4B01G037700.3	Wheat	cytosol, golgi	54.63	14.4
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	55.07	14.24
KXG37783	Sorghum	cytosol	55.95	14.22
KRG91271	Soybean	cytosol	52.86	13.99
HORVU5Hr1G117110.1	Barley	cytosol	54.63	13.98
TraesCS6B01G160400.1	Wheat	mitochondrion	53.3	13.86
GSMUA_Achr6P25110_001	Banana	cytosol	48.46	13.85
TraesCS6A01G132200.1	Wheat	mitochondrion	52.86	13.75
TraesCS6A01G132500.1	Wheat	mitochondrion	52.86	13.75
TraesCS3B01G605700.1	Wheat	cytosol	53.3	13.67
TraesCS6B01G395700.1	Wheat	cytosol	48.9	13.67
GSMUA_Achr1P22970_001	Banana	cytosol	50.66	13.59
TraesCS3B01G602500.1	Wheat	cytosol	52.42	13.51
GSMUA_Achr9P19250_001	Banana	plasma membrane	55.51	13.25
Os11t0575600-01	Rice	mitochondrion	50.66	13.25
GSMUA_Achr6P25090_001	Banana	cytosol	47.14	12.77
KRG89883	Soybean	cytosol, plastid	42.73	11.29
KRH17965	Soybean	plastid	44.93	11.11
KRH66214	Soybean	cytosol	42.29	11.09
KRG89889	Soybean	cytosol, plastid	41.85	11.05
KRH69027	Soybean	plastid	43.61	10.99
KRH18682	Soybean	cytosol, mitochondrion	44.05	10.98
KRG97300	Soybean	plastid	43.17	10.9
KRH07345	Soybean	cytosol, plastid	40.97	10.8
KRH29669	Soybean	plastid	42.73	10.77
KRH42646	Soybean	plastid	43.61	10.75
KRH29668	Soybean	nucleus	42.29	10.6
KRG89888	Soybean	nucleus	41.85	10.52
KRH24671	Soybean	cytosol, plastid	41.41	10.28
KRH21441	Soybean	cytosol	40.97	10.22
KRH06197	Soybean	nucleus	41.41	10.2
KRH47615	Soybean	nucleus	41.41	10.14
KRH50048	Soybean	cytosol	38.33	9.56
GSMUA_Achr6P25080_001	Banana	cytosol	15.86	4.65
KRH30640	Soybean	cytosol	0.44	0.53
KRH47064	Soybean	endoplasmic reticulum	1.32	0.53
KRG88464	Soybean	cytosol	0.88	0.44
GSMUA_Achr6P25100_001	Banana	cytosol	16.3	0.31
TraesCS6D01G121900.1	Wheat	mitochondrion	0.44	0.22
Os03t0700400-00	Rice	cytosol, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.245.10	MapMan:50.1.12	UniProt:A0A0R0KDG4	EMBL:ACUP02002260	EnsemblPlantsGene:GLYMA_04G105900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016702
GO:GO:0046872	GO:GO:0055114	InterPro:IPR013819	EnsemblPlants:KRH62403	ProteinID:KRH62403	ProteinID:KRH62403.1
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf	PFAM:PF00305	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF48	SUPFAM:SSF48484	UniParc:UPI0006EDBC0E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:10789400..10791837

Molecular Weight (calculated)

26201.1 Da

IEP (calculated)

5.218

GRAVY (calculated)

-0.519

Length

227 amino acids

Sequence
(BLAST)

001: MRMESVGWWG HGSKYNLGVA VKDPSAPHGV RLLIEDYPYA SDGLEIWDAI KSWVEEYVSF YYKSDEELQK DPELQAWWKE LIEVGHGDLK DKPWWQKMQT
101: REELVEASAT LIWIASALHV AVNFGQYPYG GLILNRPTIS RRFMPEKGSP EYDALAKNPE KEFLKTITGK KETLIDLTII EILSRHASDE FYLGQRDGGD
201: YWTSNVGPLK AFKRFGKNLE EIEKKLI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.