Factsheet for HORVU4Hr1G005920.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G275900.1	Wheat	cytosol, unclear	93.51	93.51
TraesCS4D01G035100.1	Wheat	cytosol	93.28	93.28
TraesCS4B01G037800.1	Wheat	cytosol	92.82	92.82
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	79.39	79.48
EER93611	Sorghum	cytosol	75.28	74.44
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	75.17	74.41
Zm00001d033624_P001	Maize	cytosol	74.94	74.18
KXG37783	Sorghum	cytosol	73.01	71.78
KRH35534	Soybean	cytosol	33.83	66.29
CDY70916	Canola	cytosol	37.81	65.87
GSMUA_Achr1P22970_001	Banana	cytosol	62.87	65.25
VIT_14s0128g00780.t01	Wine grape	cytosol	62.53	63.91
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	62.3	63.31
HORVU5Hr1G093770.1	Barley	cytosol	62.19	63.27
VIT_14s0128g00790.t01	Wine grape	cytosol	61.96	62.6
PGSC0003DMT400063654	Potato	cytosol	34.85	62.32
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	58.77	59.93
Bra021322.1-P	Field mustard	cytosol	58.43	59.86
VIT_06s0004g01580.t01	Wine grape	cytosol	22.78	59.7
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	58.43	59.51
PGSC0003DMT400028158	Potato	cytosol	58.31	59.4
AT1G55020.1	Thale cress	cytosol	57.97	59.25
Solyc09g075860.2.1	Tomato	cytosol, nucleus	59.11	59.18
KRH68548	Soybean	cytosol	57.74	59.09
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	57.86	59.07
PGSC0003DMT400081370	Potato	cytosol	59.0	59.06
KRH16725	Soybean	cytosol	15.49	58.87
PGSC0003DMT400054145	Potato	cytosol	57.52	58.86
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	32.69	58.81
HORVU5Hr1G117110.1	Barley	cytosol	59.11	58.51
KRG91271	Soybean	cytosol	56.95	58.28
PGSC0003DMT400063446	Potato	cytosol	53.08	57.96
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.38	57.2
Solyc01g099180.2.1	Tomato	cytosol	55.58	57.14
Solyc09g075870.1.1	Tomato	cytosol	55.24	56.79
KRH33939	Soybean	cytosol, endoplasmic reticulum	55.92	56.76
VIT_05s0020g03170.t01	Wine grape	cytosol	56.61	56.74
PGSC0003DMT400063461	Potato	cytosol	44.76	56.63
PGSC0003DMT400063452	Potato	cytosol	51.48	56.57
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	54.9	56.18
Bra039948.1-P	Field mustard	cytosol	56.04	55.47
KRH57987	Soybean	cytosol	16.29	55.43
KRH10050	Soybean	endoplasmic reticulum	54.1	55.43
PGSC0003DMT400063477	Potato	cytosol	53.99	55.37
CDY38326	Canola	cytosol	55.81	55.24
AT3G22400.1	Thale cress	cytosol	55.69	55.19
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.24	55.07
Solyc01g099200.2.1	Tomato	cytosol, plastid	52.73	55.05
PGSC0003DMT400063469	Potato	cytosol	52.85	55.04
CDY46325	Canola	cytosol	55.24	54.99
Solyc01g099210.2.1	Tomato	cytosol	53.87	54.81
KRH44090	Soybean	endoplasmic reticulum	53.19	54.3
Bra023829.1-P	Field mustard	cytosol	55.81	54.26
KRH44094	Soybean	endoplasmic reticulum	53.3	53.98
KRH44093	Soybean	endoplasmic reticulum	51.94	53.9
KRH23265	Soybean	endoplasmic reticulum, nucleus	53.08	53.81
CDY64191	Canola	cytosol	55.47	53.69
KRH23266	Soybean	cytosol	50.34	53.51
KRH44095	Soybean	endoplasmic reticulum	52.05	52.77
KRH44097	Soybean	cytosol, endoplasmic reticulum	52.16	52.77
KRH10053	Soybean	endoplasmic reticulum	51.25	52.76
KRH10051	Soybean	endoplasmic reticulum, nucleus	51.25	52.57
KRH47066	Soybean	endoplasmic reticulum, nucleus	51.37	52.5
KRH47522	Soybean	endoplasmic reticulum, nucleus	51.71	52.49
KRH47067	Soybean	endoplasmic reticulum	51.48	52.31
KRH23268	Soybean	endoplasmic reticulum	50.8	52.29
KRH47525	Soybean	endoplasmic reticulum	51.37	51.96
KRH13357	Soybean	endoplasmic reticulum	14.12	51.24
KRH23269	Soybean	endoplasmic reticulum	47.72	50.97
KRG88464	Soybean	cytosol	25.74	49.56
KRH47069	Soybean	endoplasmic reticulum	25.51	49.23
KRH47064	Soybean	endoplasmic reticulum	31.89	49.12
KRH44092	Soybean	nucleus	47.15	48.31
HORVU1Hr1G054390.4	Barley	cytosol	46.01	47.87
HORVU5Hr1G055110.2	Barley	mitochondrion	18.11	45.04
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	25.51	43.84
HORVU3Hr1G047210.1	Barley	cytosol	10.71	43.32
Solyc01g099150.2.1	Tomato	nucleus	42.03	42.81
CDY43490	Canola	cytosol, plasma membrane	58.54	42.73
HORVU7Hr1G050680.1	Barley	peroxisome	31.21	40.06
HORVU2Hr1G115980.2	Barley	plastid	40.09	39.91
HORVU4Hr1G076570.6	Barley	cytosol, plastid	40.89	39.19
HORVU2Hr1G115960.1	Barley	plastid	40.55	38.49
HORVU6Hr1G033600.1	Barley	plastid	38.84	38.06
HORVU5Hr1G001180.1	Barley	plastid	38.95	36.73
HORVU7Hr1G006320.4	Barley	plastid	37.02	35.06
HORVU6Hr1G000510.1	Barley	plastid	36.67	34.55

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:HORVU4Hr1G005920
EnsemblPlants:HORVU4Hr1G005920.1	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M0WVM3
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF49
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002953347	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:M0WVM3]

Coordinates

chrchr4H:-:14084104..14090842

Molecular Weight (calculated)

99178.4 Da

IEP (calculated)

6.072

GRAVY (calculated)

-0.359

Length

878 amino acids

Sequence
(BLAST)

001: MLLHGLVDRL TGKNKEAWKE GKIRGTAVLV KSDVLDLGDF HASLLDGVHK ILGKDDGVSF RLVSATAPDP QNGSRGKVGK PAHLEEMVVT MKSTAAGESV
101: FKVTFEWDES QGVPGAVIVR NTYRSEYLLK TLTLHGVPGK GTVVFVANSW IYPNVDRLFF ANDTYLPSKM PALLVQYRQD ELNNLRGDDT TGEYKEADRV
201: YRYDYYNDLG EPDNDNPRPV LGGTQELPYP RRCRTGRPPT ETDPRSESRI PKYKIKEALN IYVPRDERFG HLKLSDFLGY SLKAITEAIL PIIRTYVDST
301: PKEFDSFQDI YNLYDGLLKV PDNQHLKELK NKIPLQFIKS LLPVAGDDLL NLPLPHVIKS DKYAWRSDEE FAREMLAGVN PVCIRRLTEF PVKSTLDPSV
401: YGDQSSTITE DQIQLNLEDG LTVRQAMDKK RLFILDHHDN FMPFLDRINK LEGNYIYASR TLLFLKADGT LKPLAIELSQ PHPDGIQHGA KSTVYLPADI
501: NSGVDGQIWQ LAKAYASVDD SAWHQLISHW LNTHAVIEPF VIATNRQLSV VHPVHKLLSP HYRDTLNINA LARTTLINAG GVFELTVFPG QYALEMSAVV
601: YKNWKLTEQG LPDDLVKRGM AVPDESSPYG IRLLIKDYPY AVDGLVIWWA IERWVNEYLA IYYPNDGVLR ADKELEEWWK EVREVGHGDL KDADWWPKMV
701: TVQELAKTCT TIIWVASALH AAVNFGQYPY AGYLPNRPTV SRRPMPKEGD EEYEQLKEGG EAADMVFIHT ITSQFQTILG ITLIEILSKH SSDEVYLGQR
801: DTPEWTSDAK ALEAFKRFGS RLVEIEKRIL DMNKDPALKN RNGPVKMPYM LLYPNTSDAN GEKALGLTAM GIPNSVSI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.