Factsheet for PGSC0003DMT400063461

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099180.2.1	Tomato	cytosol	91.64	74.47
VIT_06s0004g01580.t01	Wine grape	cytosol	34.29	71.04
PGSC0003DMT400063446	Potato	cytosol	78.39	67.66
PGSC0003DMT400063452	Potato	cytosol	75.94	65.96
Os03t0700400-00	Rice	cytosol, plasma membrane	11.24	61.9
PGSC0003DMT400028158	Potato	cytosol	76.8	61.83
PGSC0003DMT400054145	Potato	cytosol	74.21	60.02
VIT_14s0128g00780.t01	Wine grape	cytosol	71.9	58.09
VIT_14s0128g00790.t01	Wine grape	cytosol	71.47	57.08
PGSC0003DMT400063654	Potato	cytosol	38.18	53.97
KRH68548	Soybean	cytosol	66.71	53.96
KRH33939	Soybean	cytosol, endoplasmic reticulum	67.15	53.87
GSMUA_Achr6P25080_001	Banana	cytosol	59.8	53.55
GSMUA_Achr1P22970_001	Banana	cytosol	64.27	52.72
Bra021322.1-P	Field mustard	cytosol	64.99	52.63
PGSC0003DMT400063469	Potato	cytosol	63.4	52.19
AT1G55020.1	Thale cress	cytosol	64.12	51.8
PGSC0003DMT400081370	Potato	cytosol	65.27	51.65
PGSC0003DMT400063477	Potato	cytosol	62.68	50.82
GSMUA_AchrUn_...	Banana	cytosol	61.1	49.59
TraesCS6D01G121900.1	Wheat	mitochondrion	31.84	49.44
GSMUA_AchrUn_...	Banana	cytosol	54.9	48.6
GSMUA_Achr6P25090_001	Banana	cytosol	57.49	47.61
GSMUA_Achr1P24370_001	Banana	cytosol	58.07	47.58
GSMUA_Achr6P25110_001	Banana	cytosol	54.18	47.36
GSMUA_Achr9P19250_001	Banana	plasma membrane	63.69	46.48
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	58.07	45.95
EER93612	Sorghum	cytosol	57.06	45.73
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	58.36	45.66
CDY70916	Canola	cytosol	33.14	45.63
Zm00001d033623_P003	Maize	cytosol	56.77	45.44
EER93611	Sorghum	cytosol	58.07	45.38
Zm00001d033624_P001	Maize	cytosol	57.93	45.32
TraesCS5B01G382300.1	Wheat	cytosol, unclear	56.34	45.25
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	56.34	45.25
TraesCS5A01G378700.1	Wheat	cytosol	56.2	45.14
TraesCS5B01G382400.1	Wheat	cytosol, golgi	55.48	44.98
TraesCS5B01G382600.1	Wheat	cytosol	55.62	44.83
TraesCS5A01G378900.1	Wheat	cytosol	55.76	44.79
TraesCS4D01G035100.1	Wheat	cytosol	56.63	44.76
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	56.63	44.76
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	55.62	44.68
TraesCS4A01G275900.1	Wheat	cytosol, unclear	56.48	44.65
TraesCS5A01G378800.2	Wheat	cytosol	50.0	44.6
TraesCS4B01G037800.1	Wheat	cytosol	56.34	44.53
HORVU5Hr1G093770.1	Barley	cytosol	55.19	44.38
Os03t0699700-01	Rice	cytosol, plastid	54.9	44.15
Os03t0738600-01	Rice	plasma membrane, plastid	55.19	44.02
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	54.32	43.79
TraesCS3B01G602500.1	Wheat	cytosol	55.48	43.7
EES04025	Sorghum	cytosol	54.61	43.66
Zm00001d042541_P002	Maize	cytosol	55.19	43.33
TraesCS4B01G037700.3	Wheat	cytosol, golgi	53.75	43.32
EES04028	Sorghum	cytosol	54.47	43.3
TraesCS3B01G605700.1	Wheat	cytosol	55.19	43.28
TraesCS5D01G388800.1	Wheat	cytosol	55.62	43.03
TraesCS6B01G160400.1	Wheat	mitochondrion	54.03	42.96
TraesCS6A01G132500.1	Wheat	mitochondrion	54.03	42.96
TraesCS6A01G132200.1	Wheat	mitochondrion	54.03	42.96
TraesCS4D01G035200.1	Wheat	cytosol	51.01	42.7
KXG37783	Sorghum	cytosol	54.76	42.55
Zm00001d042540_P008	Maize	cytosol	54.03	42.04
TraesCS5D01G513100.1	Wheat	cytosol	51.87	41.47
TraesCS5A01G379000.1	Wheat	nucleus, unclear	45.97	41.43
Os11t0575600-01	Rice	mitochondrion	51.44	41.13
HORVU5Hr1G117110.1	Barley	cytosol	51.3	40.14
TraesCS4A01G359800.1	Wheat	cytosol	30.4	39.74
TraesCS6B01G395700.1	Wheat	cytosol	45.24	38.67
CDY43490	Canola	cytosol, plasma membrane	64.99	37.49
PGSC0003DMT400020118	Potato	cytosol	34.29	34.34
PGSC0003DMT400074324	Potato	cytosol	17.0	34.1
PGSC0003DMT400058933	Potato	plastid	43.23	32.82
PGSC0003DMT400074322	Potato	cytosol	19.88	31.22
PGSC0003DMT400045047	Potato	cytosol, plastid	40.78	31.1
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	21.76	30.94
PGSC0003DMT400081909	Potato	plastid	39.77	30.7
PGSC0003DMT400034472	Potato	cytosol	19.45	30.2
TraesCS6D01G122000.1	Wheat	cytosol	10.66	23.87
TraesCS4A01G275800.1	Wheat	cytosol	5.91	17.15
GSMUA_Achr6P25100_001	Banana	cytosol	58.21	3.36

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1CAP5	PFAM:PF00305	PFAM:PF01477	EnsemblPlantsGene:PGSC0003DMG401024691
PGSC:PGSC0003DMG401024691	EnsemblPlants:PGSC0003DMT400063461	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002959012	SEG:seg	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG401024691]

Coordinates

chr1:+:76977769..76980606

Molecular Weight (calculated)

79122.0 Da

IEP (calculated)

5.273

GRAVY (calculated)

-0.368

Length

694 amino acids

Sequence
(BLAST)

001: MHAITGKDYG KKVKGKVVLM KKNVLDFTDI KAAVVDEVIE LLGEKVSFQL ISSSVFDDPE NGSEGKRSNP AYLENWLTNI TPIIAGESTF SVTFDWDRNE
101: FGVPGAFIIK NFHLNEFFLK SLTLEHVPNH GKIHFVCNSW VYPAFRYKSD RIFFANQAYL PSETPEPLRK YRENELVTLR GDGTGKLEEW DRVYDYAYYN
201: DLGDPDKGEE YARPVLGGSS EYPYPRRGRT GREPTKTDPN CESRIPLFMS LDVYVPRDER FGHLEMSDFL TFYLKSIVQS LLPAFKALFD YTPNEFDSFE
301: DVLKLYEGGI KFPQGPLLKD INDSIPLEIL KDIFHSDGEG LFKFPTPQVI QEDKTAWRTD EEFGREMLAG INPVLITRLQ EFPPKSNLDP NIYGNQNSTI
401: TREQIEDKLD GLTVDEAIKA NMLFILNHHD IVMPYLRRIN TTTNTETYAS RTLLFLQDNG TLKPLAIELS LPHPDGDQFG TVSKVYTPSD QGVEGSIWQL
501: AKAYAVVNDS GIHELISHWL NTHAVIEPFV IATNRQLSVL HPIHKLLLPH FRDTMNINAL GRHQLINSAG TVELTFFTAK YSMEMSAVVY KDWIFPEQAL
601: PADLIQRGVA VEDSSSPHGI RLLIQDYPYA VDGLKIWSAI KSWVTEYCNF YYKSDDTVQK DSELQAWWKD SAKKDMVTRK MSLGGLKCKL DKSS

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.