Factsheet for PGSC0003DMT400063452

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063446	Potato	cytosol	77.35	76.87
PGSC0003DMT400063461	Potato	cytosol	65.96	75.94
PGSC0003DMT400028158	Potato	cytosol	77.35	71.69
PGSC0003DMT400063654	Potato	cytosol	44.06	71.69
VIT_06s0004g01580.t01	Wine grape	cytosol	28.29	67.46
PGSC0003DMT400054145	Potato	cytosol	71.46	66.55
VIT_14s0128g00780.t01	Wine grape	cytosol	69.71	64.84
VIT_14s0128g00790.t01	Wine grape	cytosol	69.34	63.75
KRH68548	Soybean	cytosol	66.21	61.66
PGSC0003DMT400063469	Potato	cytosol	64.46	61.09
KRH33939	Soybean	cytosol, endoplasmic reticulum	66.08	61.04
Bra021322.1-P	Field mustard	cytosol	64.71	60.33
CDY70916	Canola	cytosol	37.42	59.33
AT1G55020.1	Thale cress	cytosol	63.33	58.91
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	37.67	58.9
GSMUA_Achr1P22970_001	Banana	cytosol	61.7	58.27
PGSC0003DMT400081370	Potato	cytosol	63.83	58.15
PGSC0003DMT400063477	Potato	cytosol	61.2	57.13
GSMUA_AchrUn_...	Banana	cytosol	60.7	56.73
Os03t0700400-00	Rice	cytosol, plasma membrane	8.89	56.35
GSMUA_AchrUn_...	Banana	cytosol	53.94	54.97
GSMUA_Achr1P24370_001	Banana	cytosol	57.95	54.66
GSMUA_Achr6P25090_001	Banana	cytosol	56.57	53.94
GSMUA_Achr6P25110_001	Banana	cytosol	53.44	53.78
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	57.57	52.45
TraesCS4A01G275800.1	Wheat	cytosol	15.64	52.3
EER93611	Sorghum	cytosol	57.57	51.8
GSMUA_Achr9P19250_001	Banana	plasma membrane	61.58	51.73
TraesCS4A01G275900.1	Wheat	cytosol, unclear	56.82	51.71
TraesCS4B01G037800.1	Wheat	cytosol	56.7	51.59
TraesCS4D01G035100.1	Wheat	cytosol	56.7	51.59
Zm00001d033623_P003	Maize	cytosol	55.94	51.56
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	57.2	51.52
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	56.57	51.48
TraesCS4A01G359800.1	Wheat	cytosol	34.17	51.41
Zm00001d033624_P001	Maize	cytosol	57.07	51.41
Os03t0699700-01	Rice	cytosol, plastid	55.44	51.33
EER93612	Sorghum	cytosol	55.57	51.27
EES04025	Sorghum	cytosol	55.32	50.92
TraesCS5B01G382300.1	Wheat	cytosol, unclear	54.57	50.46
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	54.32	50.41
TraesCS5A01G378800.2	Wheat	cytosol	48.94	50.26
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	54.32	50.23
TraesCS5B01G382600.1	Wheat	cytosol	54.07	50.17
TraesCS5B01G382400.1	Wheat	cytosol, golgi	53.69	50.12
TraesCS5A01G378700.1	Wheat	cytosol	54.19	50.12
Zm00001d042541_P002	Maize	cytosol	55.44	50.11
KXG37783	Sorghum	cytosol	55.94	50.06
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	54.07	50.0
Os03t0738600-01	Rice	plasma membrane, plastid	54.44	50.0
TraesCS5A01G378900.1	Wheat	cytosol	54.07	50.0
EES04028	Sorghum	cytosol	54.57	49.94
TraesCS4B01G037700.3	Wheat	cytosol, golgi	53.69	49.83
HORVU5Hr1G093770.1	Barley	cytosol	53.69	49.71
TraesCS6A01G132500.1	Wheat	mitochondrion	54.19	49.6
TraesCS6A01G132200.1	Wheat	mitochondrion	54.19	49.6
TraesCS6B01G160400.1	Wheat	mitochondrion	54.07	49.48
TraesCS4D01G035200.1	Wheat	cytosol	51.31	49.46
TraesCS3B01G602500.1	Wheat	cytosol	54.19	49.15
TraesCS3B01G605700.1	Wheat	cytosol	54.07	48.81
TraesCS6D01G122000.1	Wheat	cytosol	18.9	48.71
Zm00001d042540_P008	Maize	cytosol	54.07	48.43
TraesCS5A01G379000.1	Wheat	nucleus, unclear	46.43	48.18
TraesCS5D01G388800.1	Wheat	cytosol	53.94	48.05
TraesCS6D01G121900.1	Wheat	mitochondrion	26.78	47.87
GSMUA_Achr6P25080_001	Banana	cytosol	45.81	47.23
Os11t0575600-01	Rice	mitochondrion	50.81	46.77
TraesCS5D01G513100.1	Wheat	cytosol	50.81	46.77
HORVU5Hr1G117110.1	Barley	cytosol	51.31	46.22
TraesCS6B01G395700.1	Wheat	cytosol	43.8	43.1
CDY43490	Canola	cytosol, plasma membrane	64.58	42.89
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	25.91	42.42
PGSC0003DMT400074322	Potato	cytosol	22.65	40.95
PGSC0003DMT400034472	Potato	cytosol	22.78	40.72
PGSC0003DMT400020118	Potato	cytosol	34.79	40.12
PGSC0003DMT400058933	Potato	plastid	42.18	36.87
PGSC0003DMT400045047	Potato	cytosol, plastid	40.43	35.49
PGSC0003DMT400081909	Potato	plastid	39.42	35.04
PGSC0003DMT400074324	Potato	cytosol	15.02	34.68
GSMUA_Achr6P25100_001	Banana	cytosol	44.56	2.96

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1CAP4	PFAM:PF00305	PFAM:PF01477
EnsemblPlantsGene:PGSC0003DMG400024690	PGSC:PGSC0003DMG400024690	EnsemblPlants:PGSC0003DMT400063452	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000294961D	SEG:seg	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400024690]

Coordinates

chr1:+:76972977..76976319

Molecular Weight (calculated)

91106.4 Da

IEP (calculated)

5.178

GRAVY (calculated)

-0.362

Length

799 amino acids

Sequence
(BLAST)

001: MFLSKIVDAI TGKKVRGTVV LMKKNVLDFT DIKASVVDEV VEFLGKKVSF QLISSSVHDD PENGSQGKLS NPAYLENWLT HITPIIAGES TFSVTFEWDH
101: EEFGVPGAFI INNFHLNEFF LKSLTLEHVP NHGKIHFICN SWIYPASKYK SDRIFFANQA YLPSDTPEPL RKYRENELVT LRGDGTGKLE EWDRVYDYAY
201: YNDLGDPDKG KEYARPVLGG SSEYPYPRRD PNSESRIPSL MSLDIYVPRD ERFGHVKMSD FLTFFLKSIM QTLLPGFEGL FDNMPNEFDN FEDVLKLYEG
301: GIKLPVGPWL KAIIDSIPSE ILKDILQTDG QGLLKYPTPQ VIQEDKFAWR TDEEFGRETL AGTNPVLISR LQEFPPKSNL DRNIYGNQNS TITREQIEDK
401: LDGLTVDEAI KTNRLFILNH HDIVMPLLRR INTSTNTKTY ASTTLLFLQD TETLKPVAIE LSLPHPNGDQ FGAVSKVYTP SDQGVEGSIW QLAKAYATVN
501: DSGTHQLISH WLNTHAVMEP FVIATNRQLS YFMSFRLANM TIILLNYRGM AVEDSISPFG IRLLIQDYPY AVDGLKIWST IKIWVTEYCN FYYKSDDTVQ
601: KDNELQAWWK EIREEGHGDK KDEPWWPKMQ TLQELIDSCT IIIWIASALH AAVNFGNYSY GGYLVNRPSL SRKLMPEPGS AEYEELKINP DKVFLKTVVP
701: QQLTLLGMSV LELLSRHASD TLYLGQNDSP EWTKDQEPLL AFERFGKKLS DIENQIIQMN GDHKKWKNRS GPVKVPYTLL FPTSEEGLTG KGIPNSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.