Factsheet for TraesCS4B01G037700.3

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G275800.1	Wheat	cytosol	27.18	97.91
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	97.56	97.56
TraesCS4D01G035200.1	Wheat	cytosol	92.57	96.14
Zm00001d033623_P003	Maize	cytosol	84.2	83.62
EER93612	Sorghum	cytosol	83.39	82.91
Os03t0700400-00	Rice	cytosol, plasma membrane	11.85	80.95
TraesCS5B01G382300.1	Wheat	cytosol, unclear	74.56	74.31
TraesCS5B01G382400.1	Wheat	cytosol, golgi	72.94	73.36
TraesCS5B01G382600.1	Wheat	cytosol	72.47	72.47
TraesCS4B01G037800.1	Wheat	cytosol	67.25	65.95
TraesCS6B01G395700.1	Wheat	cytosol	59.81	63.42
TraesCS3B01G602500.1	Wheat	cytosol	63.88	62.43
KRH35534	Soybean	cytosol	32.4	62.28
GSMUA_Achr1P22970_001	Banana	cytosol	60.98	62.06
TraesCS3B01G605700.1	Wheat	cytosol	63.3	61.58
TraesCS6B01G160400.1	Wheat	mitochondrion	61.79	60.94
CDY70916	Canola	cytosol	35.66	60.91
KRH16725	Soybean	cytosol	16.14	60.17
VIT_14s0128g00780.t01	Wine grape	cytosol	59.12	59.25
PGSC0003DMT400063654	Potato	cytosol	33.45	58.66
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	58.3	58.24
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	58.07	58.07
PGSC0003DMT400028158	Potato	cytosol	58.07	58.0
VIT_14s0128g00790.t01	Wine grape	cytosol	58.42	57.88
Bra021322.1-P	Field mustard	cytosol	57.26	57.53
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	57.14	57.21
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.68	57.2
PGSC0003DMT400054145	Potato	cytosol	56.79	56.99
PGSC0003DMT400081370	Potato	cytosol	57.96	56.9
Solyc09g075860.2.1	Tomato	cytosol, nucleus	57.84	56.78
AT1G55020.1	Thale cress	cytosol	56.45	56.58
KRG91271	Soybean	cytosol	56.21	56.41
VIT_05s0020g03170.t01	Wine grape	cytosol	57.14	56.16
PGSC0003DMT400063446	Potato	cytosol	52.26	55.97
KRH68548	Soybean	cytosol	55.52	55.71
Solyc09g075870.1.1	Tomato	cytosol	55.05	55.5
KRH57987	Soybean	cytosol	16.61	55.43
Solyc01g099180.2.1	Tomato	cytosol	54.47	54.92
PGSC0003DMT400063477	Potato	cytosol	54.59	54.91
Solyc01g099210.2.1	Tomato	cytosol	54.82	54.69
KRH33939	Soybean	cytosol, endoplasmic reticulum	54.94	54.68
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	54.47	54.66
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.4	54.63
KRH44093	Soybean	endoplasmic reticulum	53.31	54.26
KRH23266	Soybean	cytosol	51.92	54.12
Solyc01g099200.2.1	Tomato	cytosol, plastid	52.85	54.1
KRH10050	Soybean	endoplasmic reticulum	53.66	53.91
KRH44090	Soybean	endoplasmic reticulum	53.77	53.84
PGSC0003DMT400063461	Potato	cytosol	43.32	53.75
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.01	53.7
PGSC0003DMT400063452	Potato	cytosol	49.83	53.69
PGSC0003DMT400063469	Potato	cytosol	52.5	53.62
AT3G22400.1	Thale cress	cytosol	55.05	53.5
KRH10051	Soybean	endoplasmic reticulum, nucleus	52.96	53.27
CDY46325	Canola	cytosol	54.47	53.17
Bra039948.1-P	Field mustard	cytosol	54.7	53.1
KRH47522	Soybean	endoplasmic reticulum, nucleus	53.31	53.06
KRH44094	Soybean	endoplasmic reticulum	53.31	52.94
VIT_06s0004g01580.t01	Wine grape	cytosol	20.56	52.84
KRH44095	Soybean	endoplasmic reticulum	53.08	52.77
CDY38326	Canola	cytosol	54.36	52.76
KRH44097	Soybean	cytosol, endoplasmic reticulum	52.96	52.53
KRH47525	Soybean	endoplasmic reticulum	52.85	52.42
KRH47066	Soybean	endoplasmic reticulum, nucleus	52.26	52.39
KRH10053	Soybean	endoplasmic reticulum	51.8	52.29
Bra023829.1-P	Field mustard	cytosol	54.59	52.05
KRH23268	Soybean	endoplasmic reticulum	51.34	51.82
CDY64191	Canola	cytosol	54.47	51.71
KRH23269	Soybean	endoplasmic reticulum	49.36	51.7
KRH47067	Soybean	endoplasmic reticulum	51.68	51.5
KRH47069	Soybean	endoplasmic reticulum	26.95	50.99
KRG88464	Soybean	cytosol	26.71	50.44
KRH13357	Soybean	endoplasmic reticulum	13.94	49.59
KRH44092	Soybean	nucleus	48.08	48.31
KRH47064	Soybean	endoplasmic reticulum	31.82	48.07
TraesCS1B01G226400.1	Wheat	cytosol	44.6	45.5
Solyc01g099150.2.1	Tomato	nucleus	41.81	41.76
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	24.27	40.9
CDY43490	Canola	cytosol, plasma membrane	57.14	40.9
TraesCS6B01G014400.1	Wheat	cytosol	27.06	38.77
TraesCS2B01G333600.1	Wheat	plastid	40.65	38.17
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	40.53	37.65
TraesCS4B01G295200.1	Wheat	plastid	39.72	37.05
TraesCS7B01G145200.1	Wheat	plastid	39.84	36.96
TraesCS6B01G193400.1	Wheat	plastid	38.68	36.96
TraesCS5B01G006500.1	Wheat	plastid	39.02	36.21
TraesCS5B01G033000.1	Wheat	plastid	37.28	33.79

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF49	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS4B01G037700
EnsemblPlants:TraesCS4B01G037700.3	TIGR:cd01751	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:+:27248262..27252524

Molecular Weight (calculated)

96059.5 Da

IEP (calculated)

6.220

GRAVY (calculated)

-0.261

Length

861 amino acids

Sequence
(BLAST)

001: MILGGLVDSL TGANKSARLK GTVVLMRKNV LDLNDFGATI MDGIGEFIGK GVTCQLISST LVDHDNGGRG KVGAEAELEQ WVTSLPSLTT GESKFGLTFD
101: WEVEKLGVPG AIIVNNHHSS EFLLKTVTLH DVPGRGNLSF VANSWIYPVG SYTYSRVFFA NDTYLPSQMP AALKPYRDDE LRNLRGDDRQ GPYQEHDRVY
201: RYDVYNDLGE GRPVLGGSAE HPYPRRGRTG RKPNANDPSL ESRLSLLEQI YVPRDEKFGH LKTSDFLGYS IKAITQGILP AVRTYVDTTP GEFDSFQDII
301: NLYEGGIKLP NVPALEELRK QFPLQLIKDL LPVGGDSLLK LPVPHIIQAD QQAWRTDEEF SREVLAGVNP VMITRLTEFP PKSSLDPSKF GDHTSTVTAA
401: HIEKNLEGLT VQQALESNRL YILDHHDRFM PFLIDVNNLP GNFIYATRTL FFLRGDGRLT PLAIELSEPV IQGGLTTAKS KVYTPVPSGS VEGWVWEFAK
501: AYVAVNDSGW HQLVSHWLNT HAVMEPFVIS TNRQLSVTHP VHKLLSPHYR DTMTINALAR QTLINAGGIF EMTVFPGKFA LGMSSVVYKD WKFTEQGLPD
601: DLIKRGMAVE DPSSPYKVRL LVSDYPYAAD GLAIWHAIEQ YVSEYLAIYY PNDGVVQGDV ELQAWWKEVR EVGHGDLKVA PWWPRMQAVG ELAKACTTII
701: WIGSALHAAV NFGQYPYAGF LPNRPTVSRR RMPEPGTEQY AELERDPERA FIHTITSQIQ TIIGISLLEV LSKHSSDELY LGQRDTPEWT SDPKALEVFK
801: RFSERLVEIE SKVVGMNHDP QLLNRNGPAK FPYMLLYPNT SDHKGAAAGL TAKGIPNSIS I

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.