CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47069	Soybean	endoplasmic reticulum	48.73	92.97
KRH44095	Soybean	endoplasmic reticulum	87.56	87.76
KRH16725	Soybean	cytosol	20.28	76.19
KRH10051	Soybean	endoplasmic reticulum, nucleus	74.88	75.93
KRH10050	Soybean	endoplasmic reticulum	74.77	75.73
KRH62399	Soybean	cytosol, endoplasmic reticulum	20.51	75.42
KRH23268	Soybean	endoplasmic reticulum	72.7	73.97
KRH10053	Soybean	endoplasmic reticulum	72.47	73.74
KRH23269	Soybean	endoplasmic reticulum	69.35	73.24
KRH57987	Soybean	cytosol	21.66	72.87
KRH62403	Soybean	cytosol, endoplasmic reticulum	19.01	72.69
KRH47522	Soybean	endoplasmic reticulum, nucleus	68.78	69.02
KRH44090	Soybean	endoplasmic reticulum	68.09	68.72
KRH23265	Soybean	endoplasmic reticulum, nucleus	68.32	68.48
KRH44094	Soybean	endoplasmic reticulum	68.2	68.28
KRH23266	Soybean	cytosol	64.75	68.04
KRH47066	Soybean	endoplasmic reticulum, nucleus	66.82	67.52
KRH47067	Soybean	endoplasmic reticulum	66.71	67.01
KRH44093	Soybean	endoplasmic reticulum	65.21	66.9
KRH47064	Soybean	endoplasmic reticulum	43.78	66.67
KRH47525	Soybean	endoplasmic reticulum	65.9	65.9
KRH35534	Soybean	cytosol	32.83	63.62
KRH13357	Soybean	endoplasmic reticulum	17.4	62.4
KRH68548	Soybean	cytosol	60.25	60.96
KRH33939	Soybean	cytosol, endoplasmic reticulum	60.14	60.35
GSMUA_AchrUn_...	Banana	cytosol	53.0	58.67
TraesCS4A01G275800.1	Wheat	cytosol	16.13	58.58
GSMUA_AchrUn_...	Banana	cytosol	57.14	58.01
Os03t0700400-00	Rice	cytosol, plasma membrane	8.41	57.94
GSMUA_Achr1P22970_001	Banana	cytosol	56.45	57.92
GSMUA_Achr1P24370_001	Banana	cytosol	56.34	57.73
KRH44092	Soybean	nucleus	56.91	57.64
KRG91271	Soybean	cytosol	56.34	56.99
TraesCS4A01G359800.1	Wheat	cytosol	34.79	56.87
GSMUA_Achr6P25110_001	Banana	cytosol	51.04	55.79
Zm00001d033623_P003	Maize	cytosol	54.72	54.79
TraesCS5A01G378800.2	Wheat	cytosol	48.96	54.63
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	55.07	54.5
GSMUA_Achr6P25090_001	Banana	cytosol	52.42	54.3
EER93612	Sorghum	cytosol	53.92	54.04
TraesCS5B01G382400.1	Wheat	cytosol, golgi	53.11	53.86
TraesCS5B01G382600.1	Wheat	cytosol	53.23	53.66
HORVU5Hr1G093770.1	Barley	cytosol	53.34	53.65
TraesCS6D01G122000.1	Wheat	cytosol	19.12	53.55
EER93611	Sorghum	cytosol	54.61	53.38
EES04025	Sorghum	cytosol	53.34	53.34
TraesCS4D01G035200.1	Wheat	cytosol	50.92	53.32
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	53.0	53.24
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	52.65	53.08
TraesCS5A01G378700.1	Wheat	cytosol	52.77	53.01
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	52.77	53.01
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	54.15	52.99
TraesCS4B01G037700.3	Wheat	cytosol, golgi	52.53	52.96
TraesCS5B01G382300.1	Wheat	cytosol, unclear	52.65	52.89
Os03t0738600-01	Rice	plasma membrane, plastid	52.88	52.76
Os03t0699700-01	Rice	cytosol, plastid	52.3	52.61
TraesCS5A01G378900.1	Wheat	cytosol	52.3	52.55
TraesCS4A01G275900.1	Wheat	cytosol, unclear	53.11	52.51
TraesCS4B01G037800.1	Wheat	cytosol	53.11	52.51
TraesCS4D01G035100.1	Wheat	cytosol	53.11	52.51
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	52.77	52.16
Zm00001d033624_P001	Maize	cytosol	53.0	51.86
Zm00001d042541_P002	Maize	cytosol	52.77	51.81
EES04028	Sorghum	cytosol	52.07	51.78
GSMUA_Achr9P19250_001	Banana	plasma membrane	56.57	51.63
KXG37783	Sorghum	cytosol	52.77	51.29
TraesCS5D01G388800.1	Wheat	cytosol	52.88	51.17
Zm00001d042540_P008	Maize	cytosol	52.3	50.9
TraesCS5A01G379000.1	Wheat	nucleus, unclear	44.93	50.65
KRG88464	Soybean	cytosol	26.27	50.0
TraesCS5D01G513100.1	Wheat	cytosol	50.0	50.0
HORVU5Hr1G117110.1	Barley	cytosol	50.92	49.83
TraesCS6B01G160400.1	Wheat	mitochondrion	50.12	49.83
TraesCS3B01G605700.1	Wheat	cytosol	50.69	49.72
TraesCS3B01G602500.1	Wheat	cytosol	50.46	49.72
TraesCS6A01G132200.1	Wheat	mitochondrion	49.88	49.6
TraesCS6A01G132500.1	Wheat	mitochondrion	49.88	49.6
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	27.07	48.16
GSMUA_Achr6P25080_001	Banana	cytosol	42.63	47.74
Os11t0575600-01	Rice	mitochondrion	47.47	47.47
TraesCS6B01G395700.1	Wheat	cytosol	44.12	47.17
TraesCS6D01G121900.1	Wheat	mitochondrion	22.47	43.62
KRH07345	Soybean	cytosol, plastid	42.51	42.86
KRH66214	Soybean	cytosol	42.51	42.61
KRG89883	Soybean	cytosol, plastid	41.47	41.91
KRG89889	Soybean	cytosol, plastid	41.24	41.63
KRH69027	Soybean	plastid	42.97	41.4
KRH10882	Soybean	cytosol	20.51	41.01
KRH06197	Soybean	nucleus	43.43	40.89
KRG97300	Soybean	plastid	42.28	40.82
KRH47615	Soybean	nucleus	43.55	40.78
KRH29669	Soybean	plastid	41.71	40.18
KRH17965	Soybean	plastid	42.4	40.09
KRG89888	Soybean	nucleus	41.59	39.98
KRH42646	Soybean	plastid	42.17	39.74
KRH29668	Soybean	nucleus	41.47	39.74
KRH24671	Soybean	cytosol, plastid	41.47	39.39
KRH18682	Soybean	cytosol, mitochondrion	41.24	39.3
KRH21441	Soybean	cytosol	39.4	37.58
KRH50048	Soybean	cytosol	38.71	36.92
KRH30640	Soybean	cytosol	7.95	36.9
GSMUA_Achr6P25100_001	Banana	cytosol	41.13	2.97

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100816880	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
MapMan:50.1.12	EMBL:ACUP02004908	EnsemblPlantsGene:GLYMA_08G189800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1KUQ6	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRH44097
ProteinID:KRH44097	ProteinID:KRH44097.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF48	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI00023389B7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:15248134..15253294

Molecular Weight (calculated)

97144.7 Da

IEP (calculated)

7.440

GRAVY (calculated)

-0.320

Length

868 amino acids

Sequence
(BLAST)

001: MFSGVTGLIN RGHKVKGTVV LMQKNVLDVN ALTSAKSVGG IAGGALGVVG GVIGTAVDTL TSFLGRSVAL RLISATSSDG SGKGKVGKQT FLEGIVTSLP
101: TLGAGQSAFN VHFEWDTDMG IPGAFYIENF MQVEFFLVSL TLEDIPNHGS IHFLCNSWVY NSKKYKSDRI FFANKTYLPS ETPGPLVKYR EEELKTLRGD
201: GTGERQEHER IYDYDVYNDL GDPDSNARLA RPVLGGSTTL PYPRRGRTGR KKSKKDPKSE SRSDFVYLPR DESFGHLKSS DFLVYILKSA SQNVIPKLQS
301: ALRLQFNQPE FNSFDDVRGL YDGGIKLPTD TLSQLSPIPL FKELFRTDGE QALKFPTPKV VQVEQSAWMT DEEFTREMIA GVNPHIIKRL QEFPPKSKLD
401: SQLYGDNTST IAKQHLEPNL GGLTVEQAIQ HNRLFILDHH DTIFPYLRKI NATDTKAYAT RTIIFLQDNG TLKPLAIELS KPHPRGDNYG PVSNVYLPAN
501: QGVEASIWLL AKAYAVVNDS CFHQLVSHWL NTHAVVEPFI IATNRHLSVV HPIHKLLLPH YRDTMNINSL ARNVLVNAEG IIESTFLWGG YSLEMSAVVY
601: KDWVFTEQAL PADLVKRGVA VKDSSSPHGL RLLIEDYPYA ADGLEIWATI KSWVQEYVSF YYKSDAAIAQ DAELQAFWKE LVEVGHGDKK NEPWWGKMKT
701: RQELIDSCTI LIWTASALHA AVNFGQYPYG GYILNRPTLS RRFMPEKGSP EYDELAKNPQ KAYLKTITGK NETLTDLTII EVLSRHASDE LYLGQRDGGN
801: GWTSDAQIIQ AFKRFGNKLA EIEQKLIQRN NDETLRNRYG PVKMPYTLLY PSSEEGLTFR GIPNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.