Factsheet for TraesCS5A01G379000.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion

unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G378900.1	Wheat	cytosol	96.23	85.76
TraesCS5B01G382600.1	Wheat	cytosol	92.6	82.81
HORVU5Hr1G093770.1	Barley	cytosol	90.26	80.53
TraesCS5D01G388800.1	Wheat	cytosol	93.25	80.04
TraesCS4A01G275800.1	Wheat	cytosol	24.68	79.5
TraesCS4A01G359800.1	Wheat	cytosol	54.03	78.34
TraesCS5A01G378800.2	Wheat	cytosol	78.18	77.38
TraesCS5A01G378700.1	Wheat	cytosol	79.35	70.72
Os03t0738600-01	Rice	plasma membrane, plastid	73.64	65.17
EES04025	Sorghum	cytosol	70.52	62.56
Zm00001d042541_P002	Maize	cytosol	70.91	61.76
KRH16725	Soybean	cytosol	18.44	61.47
KRH35534	Soybean	cytosol	35.71	61.38
EES04028	Sorghum	cytosol	68.83	60.71
CDY70916	Canola	cytosol	39.09	59.72
PGSC0003DMT400063654	Potato	cytosol	38.05	59.67
KRH62399	Soybean	cytosol, endoplasmic reticulum	18.18	59.32
Zm00001d042540_P008	Maize	cytosol	68.57	59.19
KRH57987	Soybean	cytosol	19.48	58.14
KRH62403	Soybean	cytosol, endoplasmic reticulum	16.88	57.27
TraesCS4A01G275900.1	Wheat	cytosol, unclear	59.61	52.28
GSMUA_Achr1P22970_001	Banana	cytosol	55.58	50.59
TraesCS6A01G132500.1	Wheat	mitochondrion	57.14	50.4
TraesCS6A01G132200.1	Wheat	mitochondrion	57.14	50.4
VIT_14s0128g00780.t01	Wine grape	cytosol	55.97	50.17
KRH13357	Soybean	endoplasmic reticulum	15.71	50.0
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	55.97	50.0
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	55.58	49.71
PGSC0003DMT400028158	Potato	cytosol	55.45	49.54
PGSC0003DMT400054145	Potato	cytosol	54.81	49.18
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	54.55	48.84
VIT_14s0128g00790.t01	Wine grape	cytosol	55.06	48.79
PGSC0003DMT400063446	Potato	cytosol	50.78	48.63
Solyc01g099180.2.1	Tomato	cytosol	53.64	48.36
KRG91271	Soybean	cytosol	53.77	48.25
Bra021322.1-P	Field mustard	cytosol	53.51	48.07
KRH68548	Soybean	cytosol	53.25	47.79
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	52.99	47.55
KRH10050	Soybean	endoplasmic reticulum	52.86	47.49
AT1G55020.1	Thale cress	cytosol	52.86	47.38
KRH33939	Soybean	cytosol, endoplasmic reticulum	52.86	47.05
PGSC0003DMT400063477	Potato	cytosol	52.21	46.96
Solyc09g075860.2.1	Tomato	cytosol, nucleus	53.38	46.86
Solyc01g099200.2.1	Tomato	cytosol, plastid	51.17	46.85
PGSC0003DMT400081370	Potato	cytosol	53.12	46.64
KRH10051	Soybean	endoplasmic reticulum, nucleus	51.82	46.61
PGSC0003DMT400063469	Potato	cytosol	50.91	46.5
Solyc01g099210.2.1	Tomato	cytosol	52.08	46.47
PGSC0003DMT400063452	Potato	cytosol	48.18	46.43
KRH10053	Soybean	endoplasmic reticulum	51.43	46.42
KRH23266	Soybean	cytosol	49.61	46.25
VIT_05s0020g03170.t01	Wine grape	cytosol	52.6	46.23
KRH44093	Soybean	endoplasmic reticulum	50.78	46.22
KRH23265	Soybean	endoplasmic reticulum, nucleus	51.95	46.19
PGSC0003DMT400063461	Potato	cytosol	41.43	45.97
KRH44095	Soybean	endoplasmic reticulum	51.56	45.84
KRH23268	Soybean	endoplasmic reticulum	50.65	45.72
KRH47066	Soybean	endoplasmic reticulum, nucleus	50.52	45.29
KRH44090	Soybean	endoplasmic reticulum	50.52	45.23
Solyc09g075870.1.1	Tomato	cytosol	50.13	45.2
Bra039948.1-P	Field mustard	cytosol	51.95	45.1
KRH44097	Soybean	cytosol, endoplasmic reticulum	50.65	44.93
AT3G22400.1	Thale cress	cytosol	51.69	44.92
KRH47067	Soybean	endoplasmic reticulum	50.39	44.91
CDY46325	Canola	cytosol	51.43	44.9
CDY38326	Canola	cytosol	51.69	44.87
KRH23269	Soybean	endoplasmic reticulum	47.53	44.53
KRH44094	Soybean	endoplasmic reticulum	50.13	44.52
KRH47522	Soybean	endoplasmic reticulum, nucleus	49.87	44.39
Bra023829.1-P	Field mustard	cytosol	51.3	43.74
CDY64191	Canola	cytosol	51.17	43.44
KRH47525	Soybean	endoplasmic reticulum	48.7	43.2
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	28.31	42.66
KRH44092	Soybean	nucleus	46.23	41.54
TraesCS7A01G034900.1	Wheat	mitochondrion	15.19	39.93
TraesCS1A01G212900.1	Wheat	cytosol	41.43	37.8
KRH47064	Soybean	endoplasmic reticulum	26.88	36.32
VIT_06s0004g01580.t01	Wine grape	cytosol	15.71	36.12
KRH47069	Soybean	endoplasmic reticulum	21.17	35.82
Solyc01g099150.2.1	Tomato	nucleus	39.61	35.38
CDY43490	Canola	cytosol, plasma membrane	53.51	34.25
KRG88464	Soybean	cytosol	19.61	33.11
TraesCS2A01G525500.1	Wheat	plastid	38.18	31.72
TraesCS4A01G009400.1	Wheat	plastid	37.92	31.64
TraesCS6A01G166000.1	Wheat	golgi	36.49	31.19
TraesCS2A01G315100.2	Wheat	plastid	38.05	31.17
TraesCS5A01G007900.1	Wheat	plastid	37.53	31.14
TraesCS7A01G246200.1	Wheat	plastid	37.4	30.93
TraesCS5A01G032800.1	Wheat	mitochondrion	29.22	26.19

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	MapMan:50.1.12	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF54	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS5A01G379000	EnsemblPlants:TraesCS5A01G379000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:576269090..576272554

Molecular Weight (calculated)

82447.9 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.141

Length

770 amino acids

Sequence
(BLAST)

001: MFGGGLPIIG GIGGLTGSKT RLKGSVVLTR KNALDFNDLG ATVMDNVTEF LGRGVTCQLI SSTIVDSNNG NRGKVSAEAS LEQWITSLPF ITVGENKFSV
101: TFDWAVDKLG VPGAIIVKNN HASEFFLKTI XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI YVPRDELFGH LKKSDFLGYS LKALVDGIVP AIRTYVDLSP
201: GEFDSFADIL KLYEGGIKLP SIPALEEVRK RFPLQLVKDL IPMGGDYLLK PPKPQVIKQD EKAWMTDAEF AREILAGVNP MMITRVTEFP PKSSLDPSQY
301: GDHTSTITEA QIGSSLEGIT VQQAVSSNRL YILNHHDHMM PYLVRLNNLD DTFLYATRTL LFLKGDGTLA PVAIELSTPL LQGGLTTAKS TVYTPASTGV
401: EAWIWQLAKA YVCVNDYGYH QLVSHWLNTH AVMEPFIIAT NRQLSVTHPV HKLLHPHYRD TMNINSRARE LLVSAGGIIE LTVFQRKYAM EMSSVTYKDW
501: NFNEQALPDD LIKRGMAWRD PSSPHKVRLL LEDYPYAVDG LAIWTAIEQW VTEYLAIYYT SDSVLQSDVE LQAWWKEVRE VGHGDLKDAA WWPKMMTVAE
601: LVKACATIIW TGSALHAAVN FGQYPYAGYH PNKPSASRRP MPEPDTEEYA LLARDPEKVF IHTITNQVQS IIGISLLEIL SKHSSDEIYL GQRDTPEWTS
701: DAKALEAFKR FGTRLEGIES QVVALNGNPQ LKNRNGPAQF PYMLLYPNTS DHTGKAEGLT ARGIPNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.