Factsheet for TraesCS4A01G009400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G17420.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G17420.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G295200.1	Wheat	plastid	97.4	97.4
TraesCS4D01G294100.1	Wheat	plastid	97.18	97.29
HORVU5Hr1G055110.2	Barley	mitochondrion	36.84	96.32
HORVU4Hr1G076570.6	Barley	cytosol, plastid	95.34	96.07
Os03t0179900-01	Rice	plastid	84.18	84.64
EER95400	Sorghum	mitochondrion	83.75	83.66
Zm00001d027893_P001	Maize	plastid	83.42	79.55
GSMUA_Achr10P...	Banana	cytosol	68.04	71.36
VIT_00s0265g00170.t01	Wine grape	cytosol	34.89	63.76
Solyc03g122340.2.1	Tomato	cytosol	62.19	63.22
PGSC0003DMT400058933	Potato	plastid	62.41	63.02
CDY21750	Canola	cytosol, mitochondrion, plastid	61.65	61.92
TraesCS2A01G315100.2	Wheat	plastid	62.95	61.81
CDX81825	Canola	cytosol	61.32	61.59
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	61.32	61.59
VIT_09s0002g01080.t01	Wine grape	cytosol	61.65	61.38
KRH06197	Soybean	nucleus	61.21	61.28
AT1G17420.1	Thale cress	cytosol, plastid	60.89	61.15
KRH47615	Soybean	nucleus	61.32	61.06
CDY64617	Canola	cytosol	60.56	60.83
AT1G72520.1	Thale cress	plastid	60.89	60.69
CDX96769	Canola	cytosol	60.24	60.5
Bra016602.1-P	Field mustard	cytosol	60.24	60.5
KRG97300	Soybean	plastid	58.72	60.29
KRH69027	Soybean	plastid	58.61	60.04
Bra008037.1-P	Field mustard	plastid	59.26	59.52
CDY49853	Canola	plastid	59.15	59.41
CDX82146	Canola	plastid	54.5	59.18
KRH10882	Soybean	cytosol	24.05	51.15
KRH21441	Soybean	cytosol	47.78	48.46
KRH50048	Soybean	cytosol	47.35	48.02
TraesCS4A01G359800.1	Wheat	cytosol	26.87	46.7
TraesCS5A01G378800.2	Wheat	cytosol	36.19	42.93
TraesCS6A01G166000.1	Wheat	golgi	41.71	42.73
TraesCS4A01G275800.1	Wheat	cytosol	10.83	41.84
TraesCS7A01G246200.1	Wheat	plastid	42.04	41.68
TraesCS1A01G212900.1	Wheat	cytosol	37.92	41.47
TraesCS5A01G378700.1	Wheat	cytosol	38.46	41.09
TraesCS4A01G275900.1	Wheat	cytosol, unclear	39.0	41.0
TraesCS5A01G007900.1	Wheat	plastid	41.06	40.84
TraesCS7A01G034900.1	Wheat	mitochondrion	12.68	39.93
TraesCS5A01G378900.1	Wheat	cytosol	37.38	39.93
TraesCS6A01G132200.1	Wheat	mitochondrion	37.27	39.4
TraesCS6A01G132500.1	Wheat	mitochondrion	37.27	39.4
TraesCS5A01G379000.1	Wheat	nucleus, unclear	31.64	37.92
TraesCS2A01G525500.1	Wheat	plastid	35.1	34.95
TraesCS5A01G032800.1	Wheat	mitochondrion	32.18	34.58

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS4A01G009400
EnsemblPlants:TraesCS4A01G009400.1	TIGR:cd01751	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:5664386..5670237

Molecular Weight (calculated)

102160.0 Da

IEP (calculated)

6.963

GRAVY (calculated)

-0.324

Length

923 amino acids

Sequence
(BLAST)

001: MAASCRELAG AGLARPATSS SQPGRSRNDL CFAPLRQEGR GHQGRIRRRG VKVVAAVSEE LPRLASAGKG AGAAARPPQG KVALRAAVTV RRKQKEDLKE
101: AVAGHLDALW DMVGRGVLLE LVSTKIDPRT SKAVRSGGAS IKDWCAKRGA RGEHVVYTAE FTVDAGFGEP GAVVVANRHH REFFLESVVV EGALPCGTVY
201: FDCNSWVQTT GELPGDGNRV FFSNKPYLPS QTPPGLREIR EKVLRDLRGD GTGVRKISDQ IYDYAMYNDL GNPDRGKEFI RPILGGDKIP YPRRCRTGRP
301: PTDTNMLSES RVEKPHRIYV PRDETFEELK QGAFISGRLR AVLHTLIPSL IASISAETHN FQGFHHVDNL YKEGLRLKLG LQEHLFQKIP FVQKIQESSE
401: GMLRYDTPSI LSKDKFAWLR DDEFARQAVA GINPVSIERL TVFPPVSKLD PATYGPPESS ITEQHIAGQL NGLTVQEAID KEKLFIVDHH DVYMPFLDRI
501: NAIEGRKAYA TRAIFFLTQG GTLKPVAIEL SLPPAQSGEP QPSKVLTPAC DATSNWIWML GKAHVSSNDA GVHQLVNHWL RTHAIMEPFI LAAHRRMSAM
601: HPIFKLLHPH MRYTLEINAL ARQSLINAEG VIESCFTPGP VSGEISSAYY GNHWRFDLEG LPADLLRRGV AVEDATQPHG IRLLIEDYPY ANDGLLLWSA
701: IGNWVESYVQ LYYPDAGTVQ SDDELQEWYH ESIHVGHADL RDAPWWPPLS TPRDLANILT TLVWLASAQH AALNFGQYPL GGYVPNRPPL MRRLLPDPER
801: DAAEYAMFLA DPHRFFLNAM PGVLEATKFM AVVDTLSTHS PDEEYLGESL DEGAAPWTGD EEALAAHGMF AADVRRAEET IERRNADHGR RNRCGAGVLP
901: YELLAPSSPP GVTCRGVPNS ISI

Best Arabidopsis Sequence Match ( AT1G72520.1 )
(BLAST)

001: MALANEIMGS RLIFERSSSL ASPFHSRFSI KKKTQRTQFS INPFDPRPMR AVNSSGVVAA ISEDLVKTLR ISTVGRKQEK EEEEEKSVKF KVRAVATVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELM STQVDPKTNE PKKSKAAVLK DWSKKSNSKA ERVHYTAEFT VDSAFGSPGA ITVTNKHQKE FFLESITIEG
201: FACGPVHFPC NSWVQSQKDH PSKRILFTNQ PYLPSETPSG LRTLREKELE NLRGNGKGER KLSDRIYDYD VYNDIGNPDI SRELARPTLG GREFPYPRRC
301: RTGRSSTDTD MMSERRVEKP LPMYVPRDEQ FEESKQNTFA ACRLKAVLHN LIPSLKASIL AEDFANFGEI DSLYKEGLLL KLGFQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTSYP PVSNLDPEIY GPGLHSALTE DHIIGQLDGL TVQQALETNR LFMVDYHDIY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPIAIELSLP SQSSSNQKSK RVVTPPVDAT SNWMWQLAKA HVGSNDAGVH QLVNHWLRTH ACLEPFILAA
601: HRQLSAMHPI FKLLDPHMRY TLEINAVARQ TLISADGVIE SCFTAGQYGL EISSAAYKNK WRFDMEGLPA DLIRRGMAVP DPTQPHGLKL LVEDYPYAND
701: GLLLWSAIQT WVRTYVERYY ANSNLIQTDT ELQAWYSESI NVGHADHRDA EWWPKLSTVE DLVSVITTII WLASAQHAAL NFGQYPYGGY VPNRPPLMRR
801: LIPDESDPEF TSFIEDPQKY FFSSMPSLLQ TTKFMAVVDT LSTHSPDEEY IGERQQPSIW TGDAEIVDAF YGFSAEIGRI EKEIDKRNRD PSRRNRCGAG
901: VLPYELMAPS SEPGVTCRGV PNSVSI

Arabidopsis Description

LOX4Lipoxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.