Factsheet for Bra008037.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49853	Canola	plastid	99.56	99.56
AT1G72520.1	Thale cress	plastid	91.73	91.04
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	81.61	81.61
Bra016602.1-P	Field mustard	cytosol	81.5	81.5
Solyc03g122340.2.1	Tomato	cytosol	71.16	72.03
PGSC0003DMT400058933	Potato	plastid	71.38	71.77
KRH06197	Soybean	nucleus	70.29	70.07
KRH47615	Soybean	nucleus	70.19	69.58
VIT_09s0002g01080.t01	Wine grape	cytosol	69.86	69.26
KRH69027	Soybean	plastid	67.57	68.92
KRG97300	Soybean	plastid	66.92	68.41
HORVU5Hr1G055110.2	Barley	mitochondrion	25.57	66.57
GSMUA_Achr9P16020_001	Banana	plastid	60.94	63.93
Os04t0447100-01	Rice	cytosol	55.06	63.57
GSMUA_Achr3P07870_001	Banana	plastid	60.72	63.48
GSMUA_Achr8P22700_001	Banana	plastid	57.89	62.74
GSMUA_Achr10P...	Banana	cytosol	59.85	62.5
Os03t0179900-01	Rice	plastid	61.04	61.11
EER95400	Sorghum	mitochondrion	61.04	60.71
TraesCS4B01G295200.1	Wheat	plastid	60.17	59.91
HORVU4Hr1G076570.6	Barley	cytosol, plastid	59.41	59.61
TraesCS4A01G009400.1	Wheat	plastid	59.52	59.26
TraesCS4D01G294100.1	Wheat	plastid	59.41	59.22
TraesCS2B01G333600.1	Wheat	plastid	58.98	59.11
TraesCS2D01G313400.1	Wheat	plastid	58.32	58.9
EES10882	Sorghum	plastid	58.32	58.01
TraesCS2A01G315100.2	Wheat	plastid	58.87	57.55
Zm00001d027893_P001	Maize	plastid	60.39	57.33
Zm00001d003533_P001	Maize	plastid	57.89	56.54
Zm00001d025524_P001	Maize	plastid	57.02	56.4
Bra033991.1-P	Field mustard	plastid	47.33	47.65
Bra004081.1-P	Field mustard	plastid	47.33	47.39
Bra003526.1-P	Field mustard	plastid	42.22	42.92
Bra004060.1-P	Field mustard	plastid	41.78	42.71
Bra021322.1-P	Field mustard	cytosol	39.83	42.71
Bra004057.1-P	Field mustard	cytosol	41.24	42.54
Bra004059.1-P	Field mustard	plastid	39.93	42.38
Bra022535.1-P	Field mustard	plastid	36.13	40.94
Bra039948.1-P	Field mustard	cytosol	39.5	40.92
Bra023829.1-P	Field mustard	cytosol	39.72	40.42
Bra004058.1-P	Field mustard	plastid	41.68	36.2

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EnsemblPlantsGene:Bra008037	EnsemblPlants:Bra008037.1	EnsemblPlants:Bra008037.1-P	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009605	GO:GO:0009607
GO:GO:0009611	GO:GO:0009617	GO:GO:0009791	GO:GO:0009901	GO:GO:0009908	GO:GO:0009987
GO:GO:0010193	GO:GO:0016165	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0034440
GO:GO:0046872	GO:GO:0048653	GO:GO:0051213	GO:GO:0055114	GO:GO:0080086	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M4CUZ2	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI00025471B5	:	:	:	:

Description

AT1G72520 (E=0.0) | lipoxygenase, putative

Coordinates

chrA02:+:12750930..12754565

Molecular Weight (calculated)

103879.0 Da

IEP (calculated)

7.033

GRAVY (calculated)

-0.403

Length

919 amino acids

Sequence
(BLAST)

001: MALAKEIMGS RLIFERSSSL ASSPFQSRLS IKKKTQRTQL SINPFDLSPM KAAISGGVVA AISEDLVKTL RFKTLGRNQE NEEVEKAVQF KVRAVVTVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELI SIQVDPKTNE PKKSKPAVLK DWSKKSNSKA EKVHYAAEFT VDSAFGLPGA ITVTNKHQKE FFLENITIEG
201: FACGPVHFPC NSWVQSQNDH PSKRIFFTNQ PYLPSETPSG LRTLREQELE NLRGNGKGER KLSDRIYDFD VYNDIGNPDI STELARPVFG GREFPYPRRC
301: RTGRRSTDTD LVSERRVEKP LPMYVPRDEQ FEESKKNTFA ACRLKAVLHN LVPSLKASIL AEDFANFGEI DSLYKEGLLL KLGIQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTTYP PVSNLDREIY GSHLDSALTE DHIIGHLDGL SVQQALETNR LFMVDYHDTY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPVAIELSLP KSKRVVTPPI DATSHWTWQL AKAHVGSNDA GVHQLVNHWL RTHACLEPFI LSAHRQLSAL
601: HPIYKLLDPH MRYTLEINAV ARQTLVSADG VIESCFTAGQ YGLEISAAAY KNQWRFDMEG LPADLIRRGM AVPDPTQPHG LKLLVEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLVK TDKELQAWYS ESINVGHADH RDADWWPELS TVDDLVSIIT TIVWLASAQH AALNFGQYPY GGYVPNRPPL MRQLIPDESE
801: PEFASFVEDP QKYFFSSLPS LLQTTKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV DAFYGFSAEI GRIEQEIEKR NKDPSRRNRC GAGVLPYELM
901: APSSEPGVTC RGVPNSVSI

Best Arabidopsis Sequence Match ( AT1G72520.1 )
(BLAST)

001: MALANEIMGS RLIFERSSSL ASPFHSRFSI KKKTQRTQFS INPFDPRPMR AVNSSGVVAA ISEDLVKTLR ISTVGRKQEK EEEEEKSVKF KVRAVATVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELM STQVDPKTNE PKKSKAAVLK DWSKKSNSKA ERVHYTAEFT VDSAFGSPGA ITVTNKHQKE FFLESITIEG
201: FACGPVHFPC NSWVQSQKDH PSKRILFTNQ PYLPSETPSG LRTLREKELE NLRGNGKGER KLSDRIYDYD VYNDIGNPDI SRELARPTLG GREFPYPRRC
301: RTGRSSTDTD MMSERRVEKP LPMYVPRDEQ FEESKQNTFA ACRLKAVLHN LIPSLKASIL AEDFANFGEI DSLYKEGLLL KLGFQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTSYP PVSNLDPEIY GPGLHSALTE DHIIGQLDGL TVQQALETNR LFMVDYHDIY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPIAIELSLP SQSSSNQKSK RVVTPPVDAT SNWMWQLAKA HVGSNDAGVH QLVNHWLRTH ACLEPFILAA
601: HRQLSAMHPI FKLLDPHMRY TLEINAVARQ TLISADGVIE SCFTAGQYGL EISSAAYKNK WRFDMEGLPA DLIRRGMAVP DPTQPHGLKL LVEDYPYAND
701: GLLLWSAIQT WVRTYVERYY ANSNLIQTDT ELQAWYSESI NVGHADHRDA EWWPKLSTVE DLVSVITTII WLASAQHAAL NFGQYPYGGY VPNRPPLMRR
801: LIPDESDPEF TSFIEDPQKY FFSSMPSLLQ TTKFMAVVDT LSTHSPDEEY IGERQQPSIW TGDAEIVDAF YGFSAEIGRI EKEIDKRNRD PSRRNRCGAG
901: VLPYELMAPS SEPGVTCRGV PNSVSI

Arabidopsis Description

LOX4Lipoxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.