Factsheet for Zm00001d003533_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G17420.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10882	Sorghum	plastid	93.62	95.35
Zm00001d025524_P001	Maize	plastid	88.31	89.45
Os04t0447100-01	Rice	cytosol	75.66	89.45
TraesCS2D01G313400.1	Wheat	plastid	83.0	85.82
TraesCS2B01G333600.1	Wheat	plastid	82.78	84.95
TraesCS2A01G315100.2	Wheat	plastid	83.0	83.09
GSMUA_Achr3P07870_001	Banana	plastid	65.99	70.65
GSMUA_Achr9P16020_001	Banana	plastid	65.36	70.21
GSMUA_Achr8P22700_001	Banana	plastid	63.23	70.17
VIT_00s0265g00170.t01	Wine grape	cytosol	35.92	66.93
Zm00001d027893_P001	Maize	plastid	62.27	60.54
AT1G17420.1	Thale cress	cytosol, plastid	58.45	59.85
CDX81825	Canola	cytosol	58.45	59.85
CDY21750	Canola	cytosol, mitochondrion, plastid	58.34	59.74
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	58.24	59.63
Solyc03g122340.2.1	Tomato	cytosol	57.49	59.58
CDY64617	Canola	cytosol	58.13	59.52
Bra016602.1-P	Field mustard	cytosol	58.13	59.52
CDX96769	Canola	cytosol	58.02	59.41
PGSC0003DMT400058933	Potato	plastid	57.39	59.08
AT1G72520.1	Thale cress	plastid	57.49	58.42
KRG97300	Soybean	plastid	55.79	58.4
VIT_09s0002g01080.t01	Wine grape	cytosol	57.39	58.25
KRH06197	Soybean	nucleus	57.07	58.24
KRH69027	Soybean	plastid	55.69	58.16
KRH47615	Soybean	nucleus	57.28	58.14
Bra008037.1-P	Field mustard	plastid	56.54	57.89
CDY49853	Canola	plastid	56.54	57.89
CDX82146	Canola	plastid	52.28	57.88
KRH10882	Soybean	cytosol	23.91	51.84
KRH50048	Soybean	cytosol	48.14	49.78
KRH21441	Soybean	cytosol	46.01	47.58
Zm00001d033623_P003	Maize	cytosol	39.21	42.56
Zm00001d015852_P004	Maize	plastid	40.38	41.71
Zm00001d053675_P001	Maize	plastid	39.96	41.55
Zm00001d033624_P001	Maize	cytosol	38.68	41.04
Zm00001d031449_P001	Maize	mitochondrion	41.45	40.8
Zm00001d041204_P001	Maize	cytosol	36.77	40.71
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	38.36	40.7
Zm00001d042541_P002	Maize	cytosol	38.04	40.5
Zm00001d042540_P008	Maize	cytosol	37.94	40.02
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	34.01	35.4

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
UniProt:A1XCI3	ncoils:Coil	EMBL:DQ335766	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	ProteinID:ONM17121.1
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0000ED5CA0	EnsemblPlantsGene:Zm00001d003533	EnsemblPlants:Zm00001d003533_P001
EnsemblPlants:Zm00001d003533_T001	SEG:seg	:	:	:	:

Description

tassel seed1Lipoxygenase

Coordinates

chr2:-:47105187..47109372

Molecular Weight (calculated)

105313.0 Da

IEP (calculated)

7.282

GRAVY (calculated)

-0.443

Length

941 amino acids

Sequence
(BLAST)

001: MASAMKLLGR SSLASPAAAA PGRERRGGPC FAAVGREGSA HRRRSSLRST APVGALAERV VVTPAPPERA GAGPPEPHPQ SVAARAVVTV RRRRKEDAKR
101: RVAEQLDAYA DRVGRSVLLE LISTETDPRK GGPKKSRRSA LVGWFEKKDV KTERVVYTAD FTVDGSFGEP GAVTVLNRHQ REFFIESIVV EGFPSGPAHF
201: TCNSWVQPTR VDRNPRVFFT NKPYLPAETP PGLQELRRQQ LSDLRGEGAD TGERRITDRV WEYDVYNDLG NPDKGAEFAR PVLGGEQQLP YPRRMRTGRP
301: KTITGKPPLS HDRAESRVEY PEPIYVSRDE EFEDGKNEML SEGALKALLH NFMPLLVSSV SPDIRDFAGF HDVDNLFKEG LRLKQALQDQ LFQKIPFVRK
401: IQENSEGLLR YDTPDIIKSK PAPMRLPPPP SMIHGEDKFA WLRDDEFARQ ALAGINPVNI ERLQAFPPMS KLDPAVYGPP ESAITEEHII GQLDGMSVQQ
501: ALQDDRLYML DYHDIFMPFL DRINALDGRK AYGTRTLFFL TAAGTLKPIA IELCLPPMTD GCARAKRVFT PPADATSNWL WQLAKAHVCS NDAGVHQLIN
601: HWLRTHAAME PFIIAAHRHL STMHPIFKLL KPHMRYTLKI NALARQILIN GDGVIESGFT PGRYCMEMSS FAYRELWRLD QEGLPADLIR RGMAVEDPTQ
701: PHGLRLLIED YPYATDGLLL WSAIRRWCDA YVAMYYPSDE SVQGDTELQS WYREAVHTGH ADKRDAPWWP RLSTPADLAS LLTTLLWLTS AQHAALNFGQ
801: YPLGGYIPNR PPLMRRLVPA EGDPEYAHLV ADPHRFFLSA LPSLTQTTTF MTVIDTLSTH SADEQYLGER PDEAWTADPA ALAAAREFAD EVRRAEEEIE
901: RRNADTGRRN RCGAGVLPYE LMAPTSGPGI TCRGVPNSVT I

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.