Factsheet for Zm00001d027893_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G17420.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95400	Sorghum	mitochondrion	90.5	94.81
Os03t0179900-01	Rice	plastid	82.13	86.6
HORVU5Hr1G055110.2	Barley	mitochondrion	31.51	86.4
HORVU4Hr1G076570.6	Barley	cytosol, plastid	79.03	83.52
TraesCS4D01G294100.1	Wheat	plastid	79.55	83.51
TraesCS4A01G009400.1	Wheat	plastid	79.55	83.42
TraesCS4B01G295200.1	Wheat	plastid	79.34	83.21
GSMUA_Achr10P...	Banana	cytosol	66.12	72.73
Solyc03g122340.2.1	Tomato	cytosol	60.85	64.87
PGSC0003DMT400058933	Potato	plastid	60.74	64.33
VIT_00s0265g00170.t01	Wine grape	cytosol	33.16	63.56
CDY21750	Canola	cytosol, mitochondrion, plastid	59.81	63.0
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	59.61	62.79
CDX81825	Canola	cytosol	59.5	62.68
AT1G17420.1	Thale cress	cytosol, plastid	59.5	62.68
VIT_09s0002g01080.t01	Wine grape	cytosol	59.71	62.35
Zm00001d003533_P001	Maize	plastid	60.54	62.27
CDY64617	Canola	cytosol	59.09	62.24
CDX96769	Canola	cytosol	58.78	61.92
Bra016602.1-P	Field mustard	cytosol	58.68	61.81
AT1G72520.1	Thale cress	plastid	58.99	61.66
KRH06197	Soybean	nucleus	58.68	61.61
Zm00001d025524_P001	Maize	plastid	59.09	61.57
KRG97300	Soybean	plastid	57.02	61.4
KRH47615	Soybean	nucleus	58.78	61.38
KRH69027	Soybean	plastid	56.92	61.15
CDX82146	Canola	plastid	53.1	60.47
Bra008037.1-P	Field mustard	plastid	57.33	60.39
CDY49853	Canola	plastid	57.23	60.28
KRH10882	Soybean	cytosol	23.66	52.77
KRH21441	Soybean	cytosol	47.0	50.0
KRH50048	Soybean	cytosol	45.14	48.02
Zm00001d033623_P003	Maize	cytosol	37.91	42.33
Zm00001d015852_P004	Maize	plastid	39.05	41.49
Zm00001d053675_P001	Maize	plastid	38.74	41.44
Zm00001d031449_P001	Maize	mitochondrion	40.6	41.11
Zm00001d042540_P008	Maize	cytosol	37.81	41.03
Zm00001d041204_P001	Maize	cytosol	35.95	40.94
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	37.09	40.47
Zm00001d042541_P002	Maize	cytosol	36.88	40.38
Zm00001d033624_P001	Maize	cytosol	36.98	40.36
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	32.02	34.29

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
UniProt:A0A1D6JQE9	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	ProteinID:ONL94215.1	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00084438B3	EnsemblPlantsGene:Zm00001d027893	EnsemblPlants:Zm00001d027893_P001	EnsemblPlants:Zm00001d027893_T001
SEG:seg	:	:	:	:	:

Description

lipoxygenase9 lipoxygenase9

Coordinates

chr1:+:16948608..16954940

Molecular Weight (calculated)

108278.0 Da

IEP (calculated)

8.590

GRAVY (calculated)

-0.328

Length

968 amino acids

Sequence
(BLAST)

001: MAAPCRDLTG LRRGLAAARL APGRRGANKL CLAPFHHRAP PPQQQQGRRR QRQGLKVVAA ISEDLPRLAA PGTGKGAPEG RRPEKVLVRA ALTVRRKHKE
101: DLKEALAGHL DALWDMVGRS VALELISTKI HPRTKKPLHS GQASIKDWCQ KRGVKGEHVV YTAEFMVDSD FGEPGAITVA NRHHREFFLE SIVVEGGLPC
201: GPVHFACNSW VQSTRELPGK RVFFSNKPYL PSETPPGLRE LRDKELKDLR GDGTGVRKLS DRIYDYATYN DLGNPDRGKE FIRPILGGDN IPYPRRCRTG
301: RPPTDTNMLA ESRVEKPHRI YVPRDEAFEE LKQGAFSSGR LRAVLHTLIP SMIATISAET HSFQGFHHVD NLYKEGLRLK LGLQEHLFQK IPLVQKIQES
401: SEGMLRYDTP RILSSKFKCL HVQRMLILRL YAEDKFAWLR DDEFARQTVA GINPVSITRL TVFPPVSKMD PAIYGPPESS ITEAHITGQL NGLTVQQAVD
501: EAKLFILDYH DVYMPFLDRI NAIEGRKAYA TRTILFLTKA GTLKPIAIEL SLPPSKAGEP RPSKVLTPPA DATSNWLWML AKAHVSSNDA GVHQLVNHWL
601: RTHAVMEPFI LAAHRRMSAM HPVFKLLHPH MRYTLEINAL ARQSLISADG VIESCFTPGP VSFEISAAYY RDHWRFDLEG LPSDLVRRHS CRCPIPVCSC
701: LFLPLSTDIS SSLVIRRVAV EDASQPHGIR LLIEDYPYAN DGLLLWSAIR SWVESYVQLY YPDAGTVQSD DELQGWYHET VHVGHADIRH APWWPSLSTP
801: GDLASILTTL VWLASAQHAA LNFGQYPLGG YVPNRPPLMR RLLPDPERDA AEYATFMADP HRFFLNAMPG VLEATKFMAV VDTLSTHSPD EEYLGEERDE
901: PWTGDAAAVA AHDMFTADVR RAEEAIDSRN ADQRRKNRCG AGVLPYELLA PSSPPGVTCR GVPNSISI

Best Arabidopsis Sequence Match ( AT1G72520.1 )
(BLAST)

001: MALANEIMGS RLIFERSSSL ASPFHSRFSI KKKTQRTQFS INPFDPRPMR AVNSSGVVAA ISEDLVKTLR ISTVGRKQEK EEEEEKSVKF KVRAVATVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELM STQVDPKTNE PKKSKAAVLK DWSKKSNSKA ERVHYTAEFT VDSAFGSPGA ITVTNKHQKE FFLESITIEG
201: FACGPVHFPC NSWVQSQKDH PSKRILFTNQ PYLPSETPSG LRTLREKELE NLRGNGKGER KLSDRIYDYD VYNDIGNPDI SRELARPTLG GREFPYPRRC
301: RTGRSSTDTD MMSERRVEKP LPMYVPRDEQ FEESKQNTFA ACRLKAVLHN LIPSLKASIL AEDFANFGEI DSLYKEGLLL KLGFQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTSYP PVSNLDPEIY GPGLHSALTE DHIIGQLDGL TVQQALETNR LFMVDYHDIY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPIAIELSLP SQSSSNQKSK RVVTPPVDAT SNWMWQLAKA HVGSNDAGVH QLVNHWLRTH ACLEPFILAA
601: HRQLSAMHPI FKLLDPHMRY TLEINAVARQ TLISADGVIE SCFTAGQYGL EISSAAYKNK WRFDMEGLPA DLIRRGMAVP DPTQPHGLKL LVEDYPYAND
701: GLLLWSAIQT WVRTYVERYY ANSNLIQTDT ELQAWYSESI NVGHADHRDA EWWPKLSTVE DLVSVITTII WLASAQHAAL NFGQYPYGGY VPNRPPLMRR
801: LIPDESDPEF TSFIEDPQKY FFSSMPSLLQ TTKFMAVVDT LSTHSPDEEY IGERQQPSIW TGDAEIVDAF YGFSAEIGRI EKEIDKRNRD PSRRNRCGAG
901: VLPYELMAPS SEPGVTCRGV PNSVSI

Arabidopsis Description

LOX4Lipoxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.