Factsheet for GSMUA_Achr10P17530_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0179900-01	Rice	plastid	74.2	71.13
EER95400	Sorghum	mitochondrion	72.27	68.83
HORVU5Hr1G055110.2	Barley	mitochondrion	27.39	68.27
TraesCS4B01G295200.1	Wheat	plastid	71.59	68.26
TraesCS4D01G294100.1	Wheat	plastid	71.48	68.22
HORVU4Hr1G076570.6	Barley	cytosol, plastid	70.91	68.12
TraesCS4A01G009400.1	Wheat	plastid	71.36	68.04
Zm00001d027893_P001	Maize	plastid	72.73	66.12
GSMUA_Achr3P07870_001	Banana	plastid	65.57	65.64
GSMUA_Achr8P22700_001	Banana	plastid	62.95	65.33
GSMUA_Achr9P16020_001	Banana	plastid	64.77	65.07
Solyc03g122340.2.1	Tomato	cytosol	65.68	63.66
PGSC0003DMT400058933	Potato	plastid	65.8	63.35
KRH06197	Soybean	nucleus	66.02	63.02
KRH47615	Soybean	nucleus	65.91	62.57
CDX81825	Canola	cytosol	64.89	62.13
CDY21750	Canola	cytosol, mitochondrion, plastid	64.55	61.81
CDX82146	Canola	plastid	59.55	61.65
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	64.32	61.59
AT1G72520.1	Thale cress	plastid	64.77	61.56
AT1G17420.1	Thale cress	cytosol, plastid	64.2	61.48
CDY64617	Canola	cytosol	64.2	61.48
KRH69027	Soybean	plastid	62.61	61.15
CDX96769	Canola	cytosol	63.86	61.15
VIT_09s0002g01080.t01	Wine grape	cytosol	64.32	61.06
Bra016602.1-P	Field mustard	cytosol	63.75	61.04
KRG97300	Soybean	plastid	61.82	60.51
Bra008037.1-P	Field mustard	plastid	62.5	59.85
CDY49853	Canola	plastid	62.39	59.74
VIT_00s0265g00170.t01	Wine grape	cytosol	34.09	59.41
KRH10882	Soybean	cytosol	25.11	50.92
GSMUA_Achr6P28450_001	Banana	plastid	48.41	48.97
KRH50048	Soybean	cytosol	49.32	47.69
KRH21441	Soybean	cytosol	48.75	47.14
GSMUA_Achr3P11780_001	Banana	plastid	40.68	42.32
GSMUA_AchrUn_...	Banana	cytosol	37.16	41.71
GSMUA_Achr9P12470_001	Banana	plastid	39.77	41.52
GSMUA_Achr1P22970_001	Banana	cytosol	39.89	41.49
GSMUA_Achr6P25090_001	Banana	cytosol	38.52	40.45
GSMUA_Achr6P25110_001	Banana	cytosol	36.36	40.3
GSMUA_AchrUn_...	Banana	cytosol	38.75	39.88
GSMUA_Achr1P24370_001	Banana	cytosol	38.07	39.55
GSMUA_Achr2P05850_001	Banana	cytosol	36.36	38.88
GSMUA_Achr9P19250_001	Banana	plasma membrane	40.11	37.12
GSMUA_Achr6P25080_001	Banana	cytosol	30.23	34.32
GSMUA_Achr6P25100_001	Banana	cytosol	29.77	2.18

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr10G17530_001
EnsemblPlants:GSMUA_Achr10P17530_001	EnsemblPlants:GSMUA_Achr10T17530_001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
UniProt:M0RJ28	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000294F0CF	SEG:seg

Description

Probable lipoxygenase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr10G17530_001]

Coordinates

chr10:-:24699132..24703399

Molecular Weight (calculated)

98572.1 Da

IEP (calculated)

8.351

GRAVY (calculated)

-0.369

Length

880 amino acids

Sequence
(BLAST)

001: MAACNEIIGV SPLGRSSFLP GNRSGRLPSM KKAVATPVVA TISEEVVKLV VGKQQQKLKV RAALTVRRKL KEDLKEVIVN QLDALSDKIG RNVVLELIST
101: EINPRTKKPN KSGETVIKDW YEKKNVKGER VVYTAEFDVD SAFGEPGAIT VVNRHQKEFF LEGVVIEGFA CGPVHFPCNS WVQSTKDLPT KRIFFSNKPY
201: LPSETPAGLK ELRKKELNEQ RGDGNGVRKR SDRIYDYATY NDLGNPDRGI EFARPTLGGK KIPYPRRCRT GRPPTDTNMV AESRIEKPHP IYVPRDEAFE
301: ELKQGAFSAG RLRAVLHNFI PSLIASISAD NHDFQGFHHI DNLYKEGLVL KLGLQEHLIK KLPFVRKIQE SSEGLLRYDT PRILSKDKFA WLRDDEFARQ
401: AVAGINPVSI ERLQAFPPVS KLDSEIYGPP ESAITEAHIS GQLEGLTVQQ AVEEGKLFVV DFHDIYLPFI ERINAMDRKA YATRTLFFLN PIGTLKPVAI
501: ELGLPPAQPG ASRPSMVLTP PRDATTNWLW MLGKAHVCSN DAGVHQLVNH WLRTHAVMEP FILAAYRQLS AMHPVFKLLH PHMRYTLEIN ALARQSLINA
601: DGVIESCFTP GAVCMEMSAA YYKHHWRFDL EGLPADLIRR QALHPPSNLP MERTHHNARG MAVEDPTQPH GVRLVLPDYP YADDGLLLWS AITSYVRSYI
701: QLYYPDSDPG RIRSDSELQA WYHESINHAA LNFGQYPLGG YVPSRPPLVR RLIPDPERDG DEYRAFLADP HRFFLSAMPS VLQATKFMAV VDTLSMHSPD
801: EEYLGGTREG AAAWTADKEA EAAYRNFADE VAAAEEEIKK RNVDPTRRNR CGAGVLPYEL LAPSSPPGVT GRGVPNSVSI

Best Arabidopsis Sequence Match ( AT1G72520.1 )
(BLAST)

001: MALANEIMGS RLIFERSSSL ASPFHSRFSI KKKTQRTQFS INPFDPRPMR AVNSSGVVAA ISEDLVKTLR ISTVGRKQEK EEEEEKSVKF KVRAVATVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELM STQVDPKTNE PKKSKAAVLK DWSKKSNSKA ERVHYTAEFT VDSAFGSPGA ITVTNKHQKE FFLESITIEG
201: FACGPVHFPC NSWVQSQKDH PSKRILFTNQ PYLPSETPSG LRTLREKELE NLRGNGKGER KLSDRIYDYD VYNDIGNPDI SRELARPTLG GREFPYPRRC
301: RTGRSSTDTD MMSERRVEKP LPMYVPRDEQ FEESKQNTFA ACRLKAVLHN LIPSLKASIL AEDFANFGEI DSLYKEGLLL KLGFQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTSYP PVSNLDPEIY GPGLHSALTE DHIIGQLDGL TVQQALETNR LFMVDYHDIY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPIAIELSLP SQSSSNQKSK RVVTPPVDAT SNWMWQLAKA HVGSNDAGVH QLVNHWLRTH ACLEPFILAA
601: HRQLSAMHPI FKLLDPHMRY TLEINAVARQ TLISADGVIE SCFTAGQYGL EISSAAYKNK WRFDMEGLPA DLIRRGMAVP DPTQPHGLKL LVEDYPYAND
701: GLLLWSAIQT WVRTYVERYY ANSNLIQTDT ELQAWYSESI NVGHADHRDA EWWPKLSTVE DLVSVITTII WLASAQHAAL NFGQYPYGGY VPNRPPLMRR
801: LIPDESDPEF TSFIEDPQKY FFSSMPSLLQ TTKFMAVVDT LSTHSPDEEY IGERQQPSIW TGDAEIVDAF YGFSAEIGRI EKEIDKRNRD PSRRNRCGAG
901: VLPYELMAPS SEPGVTCRGV PNSVSI

Arabidopsis Description

LOX4Lipoxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.