Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 4
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra010432.1-P | |
Bra026415.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G17420.1 | Bra010432.1-P | AT4G26630.1 | 25387881 |
AT1G17420.1 | Bra026415.1-P | AT4G26630.1 | 25387881 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX96769 | Canola | cytosol | 99.24 | 99.24 |
CDY64617 | Canola | cytosol | 98.8 | 98.8 |
Bra030988.1-P | Field mustard | cytosol, mitochondrion, plastid | 92.93 | 92.93 |
AT1G17420.1 | Thale cress | cytosol, plastid | 90.86 | 90.86 |
Bra008037.1-P | Field mustard | plastid | 81.5 | 81.5 |
Solyc03g122340.2.1 | Tomato | cytosol | 71.06 | 71.92 |
KRH06197 | Soybean | nucleus | 71.82 | 71.58 |
PGSC0003DMT400058933 | Potato | plastid | 70.73 | 71.12 |
KRH47615 | Soybean | nucleus | 71.6 | 70.98 |
KRH69027 | Soybean | plastid | 68.12 | 69.48 |
VIT_09s0002g01080.t01 | Wine grape | cytosol | 69.75 | 69.15 |
KRG97300 | Soybean | plastid | 67.36 | 68.85 |
HORVU5Hr1G055110.2 | Barley | mitochondrion | 26.44 | 68.84 |
Os04t0447100-01 | Rice | cytosol | 56.58 | 65.33 |
GSMUA_Achr3P07870_001 | Banana | plastid | 61.81 | 64.62 |
GSMUA_Achr9P16020_001 | Banana | plastid | 61.37 | 64.38 |
GSMUA_Achr8P22700_001 | Banana | plastid | 59.19 | 64.15 |
GSMUA_Achr10P... | Banana | cytosol | 61.04 | 63.75 |
Os03t0179900-01 | Rice | plastid | 62.89 | 62.96 |
EER95400 | Sorghum | mitochondrion | 61.92 | 61.58 |
TraesCS2B01G333600.1 | Wheat | plastid | 60.83 | 60.96 |
TraesCS2D01G313400.1 | Wheat | plastid | 60.28 | 60.88 |
HORVU4Hr1G076570.6 | Barley | cytosol, plastid | 60.61 | 60.81 |
TraesCS4B01G295200.1 | Wheat | plastid | 61.04 | 60.78 |
TraesCS4D01G294100.1 | Wheat | plastid | 60.72 | 60.52 |
TraesCS4A01G009400.1 | Wheat | plastid | 60.5 | 60.24 |
EES10882 | Sorghum | plastid | 59.96 | 59.63 |
TraesCS2A01G315100.2 | Wheat | plastid | 60.61 | 59.26 |
Zm00001d027893_P001 | Maize | plastid | 61.81 | 58.68 |
Zm00001d003533_P001 | Maize | plastid | 59.52 | 58.13 |
Zm00001d025524_P001 | Maize | plastid | 58.65 | 58.02 |
Bra004081.1-P | Field mustard | plastid | 48.42 | 48.47 |
Bra033991.1-P | Field mustard | plastid | 47.66 | 47.97 |
Bra021322.1-P | Field mustard | cytosol | 40.59 | 43.52 |
Bra004059.1-P | Field mustard | plastid | 40.37 | 42.84 |
Bra003526.1-P | Field mustard | plastid | 42.11 | 42.81 |
Bra004057.1-P | Field mustard | cytosol | 41.02 | 42.31 |
Bra004060.1-P | Field mustard | plastid | 41.24 | 42.16 |
Bra039948.1-P | Field mustard | cytosol | 40.59 | 42.05 |
Bra023829.1-P | Field mustard | cytosol | 40.59 | 41.31 |
Bra022535.1-P | Field mustard | plastid | 35.69 | 40.44 |
Bra004058.1-P | Field mustard | plastid | 41.35 | 35.92 |
Protein Annotations
Gene3D:1.20.245.10 | MapMan:11.7.1.2 | Gene3D:2.60.60.20 | Gene3D:3.10.450.60 | Gene3D:4.10.372.10 | Gene3D:4.10.375.10 |
EnsemblPlantsGene:Bra016602 | EnsemblPlants:Bra016602.1 | EnsemblPlants:Bra016602.1-P | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0006629 | GO:GO:0006633 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0016491 | GO:GO:0016702 | GO:GO:0031408 | GO:GO:0046872 | GO:GO:0051213 |
GO:GO:0055114 | InterPro:IPR001024 | InterPro:IPR013819 | InterPro:IPR027433 | InterPro:LipOase | InterPro:LipOase_C |
InterPro:LipOase_CS | InterPro:LipOase_C_sf | InterPro:LipOase_Fe_BS | InterPro:LipOase_plant | InterPro:Lipoxygenase_dom_3 | UniProt:M4DJC4 |
PFAM:PF00305 | PFAM:PF01477 | InterPro:PLAT/LH2_dom | InterPro:PLAT/LH2_dom_sf | PRINTS:PR00087 | PRINTS:PR00468 |
ScanProsite:PS00081 | ScanProsite:PS00711 | PFscan:PS50095 | PFscan:PS51393 | PANTHER:PTHR11771 | PANTHER:PTHR11771:SF67 |
SMART:SM00308 | SUPFAM:SSF48484 | SUPFAM:SSF49723 | UniParc:UPI00025454E1 | SEG:seg | : |
Description
AT1G17420 (E=0.0) LOX3 | LOX3; electron carrier/ iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Coordinates
chrA08:-:19234814..19238859
Molecular Weight (calculated)
103647.0 Da
IEP (calculated)
6.781
GRAVY (calculated)
-0.460
Length
919 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVKEIMGH PLISGRPSLV FSASHFKKKT QTTQFSIKPF DRRPKTSKSG VVSAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDF
101: KETLFKHLDA FGDKIGRNIV LELISTELDP KTNLPKKSNA AVLQDWSEKS KTKAERVHYT AEFTVDAAFG TPGAITIMNK HQKEFFLECI TIEGFALGPV
201: HFPCNSWVQS QNDHPEKRIF FTNQPFLPSE TPEGLRKPRG KELKNLRGDG TGVRRLSDRI YDFDVYNDLG NPDKSSELAR PKLGGKERPY PRRCRTGRQP
301: TDTDNEAESR VEKPLPMYVP RDEQFEETKQ DTFAAGRLKA VLHHLVPSLK ASILADDFSD FGEIDDLYKE GLLLKLGFQD EIFNKFPLPK GIVNTLQESS
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPEIYGPQHS ALTSDHIIGH LDGLSVQQAL EENRLYMLDY HDIFLPFLDQ
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPSHGPNH RSKRVVTPPV DATSNWVWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI IAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGQ YGLEISSAAY KSSWRFDMEG LPADLIRRGM AVPDPTQPHG LKLLIEDYPY ANDGLLIWSA
701: IQTWVRTYVE RYYPNSNSIQ TDSELQSWYS ESINVGHADL REAEWWPKLD TVDDLVSILT TLVWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISDP EKFYFSSMPS LLQTSKFMAV VDTLSTHSPD EEYIGERQQP STWTGDAEIV DAFYGFAAEI GRIEKEIEKR NSDPNRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
101: KETLFKHLDA FGDKIGRNIV LELISTELDP KTNLPKKSNA AVLQDWSEKS KTKAERVHYT AEFTVDAAFG TPGAITIMNK HQKEFFLECI TIEGFALGPV
201: HFPCNSWVQS QNDHPEKRIF FTNQPFLPSE TPEGLRKPRG KELKNLRGDG TGVRRLSDRI YDFDVYNDLG NPDKSSELAR PKLGGKERPY PRRCRTGRQP
301: TDTDNEAESR VEKPLPMYVP RDEQFEETKQ DTFAAGRLKA VLHHLVPSLK ASILADDFSD FGEIDDLYKE GLLLKLGFQD EIFNKFPLPK GIVNTLQESS
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPEIYGPQHS ALTSDHIIGH LDGLSVQQAL EENRLYMLDY HDIFLPFLDQ
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPSHGPNH RSKRVVTPPV DATSNWVWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI IAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGQ YGLEISSAAY KSSWRFDMEG LPADLIRRGM AVPDPTQPHG LKLLIEDYPY ANDGLLIWSA
701: IQTWVRTYVE RYYPNSNSIQ TDSELQSWYS ESINVGHADL REAEWWPKLD TVDDLVSILT TLVWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISDP EKFYFSSMPS LLQTSKFMAV VDTLSTHSPD EEYIGERQQP STWTGDAEIV DAFYGFAAEI GRIEKEIEKR NSDPNRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.