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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 5
  • plastid 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G17420.1 VIT_19s0015g00430.t01 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g122340.2.1 Tomato cytosol 73.79 75.33
PGSC0003DMT400058933 Potato plastid 73.68 74.73
KRG97300 Soybean plastid 70.33 72.53
KRH69027 Soybean plastid 70.44 72.47
KRH47615 Soybean nucleus 72.28 72.28
KRH06197 Soybean nucleus 71.84 72.23
AT1G17420.1 Thale cress cytosol, plastid 70.44 71.06
VIT_00s0265g00170.t01 Wine grape cytosol 38.51 70.69
AT1G72520.1 Thale cress plastid 70.44 70.52
CDY21750 Canola cytosol, mitochondrion, plastid 69.69 70.29
CDY64617 Canola cytosol 69.58 70.19
CDX81825 Canola cytosol 69.58 70.19
CDX82146 Canola plastid 64.29 70.12
Bra030988.1-P Field mustard cytosol, mitochondrion, plastid 69.47 70.08
Bra008037.1-P Field mustard plastid 69.26 69.86
CDX96769 Canola cytosol 69.26 69.86
Bra016602.1-P Field mustard cytosol 69.15 69.75
CDY49853 Canola plastid 69.15 69.75
HORVU5Hr1G055110.2 Barley mitochondrion 26.43 69.41
GSMUA_Achr9P16020_001 Banana plastid 62.03 65.64
Os04t0447100-01 Rice cytosol 55.99 65.2
GSMUA_Achr3P07870_001 Banana plastid 61.81 65.19
GSMUA_Achr8P22700_001 Banana plastid 59.55 65.09
GSMUA_Achr10P... Banana cytosol 61.06 64.32
Os03t0179900-01 Rice plastid 63.11 63.73
EER95400 Sorghum mitochondrion 63.0 63.2
TraesCS4B01G295200.1 Wheat plastid 62.57 62.84
HORVU4Hr1G076570.6 Barley cytosol, plastid 61.92 62.66
TraesCS4D01G294100.1 Wheat plastid 61.92 62.26
TraesCS4A01G009400.1 Wheat plastid 61.38 61.65
TraesCS2D01G313400.1 Wheat plastid 59.76 60.88
TraesCS2B01G333600.1 Wheat plastid 60.09 60.74
Zm00001d027893_P001 Maize plastid 62.35 59.71
EES10882 Sorghum plastid 59.33 59.52
TraesCS2A01G315100.2 Wheat plastid 60.19 59.36
Zm00001d025524_P001 Maize plastid 57.82 57.7
Zm00001d003533_P001 Maize plastid 58.25 57.39
VIT_01s0010g02750.t01 Wine grape plastid 51.78 52.17
VIT_13s0064g01490.t01 Wine grape cytosol 21.68 50.38
VIT_13s0064g01500.t01 Wine grape cytosol 13.48 50.0
VIT_06s0004g01500.t01 Wine grape cytosol 41.64 48.8
VIT_06s0004g01480.t01 Wine grape cytosol 41.42 48.42
VIT_13s0064g01480.t01 Wine grape plastid 45.85 47.07
VIT_06s0004g01510.t01 Wine grape plastid 44.34 45.62
VIT_06s0004g01460.t01 Wine grape plastid 28.8 44.65
VIT_06s0004g01470.t01 Wine grape cytosol 43.04 44.19
VIT_06s0004g01580.t01 Wine grape cytosol 15.53 42.99
VIT_14s0128g00780.t01 Wine grape cytosol 39.59 42.72
VIT_06s0004g01450.t01 Wine grape cytosol, extracellular 39.48 42.61
VIT_14s0128g00790.t01 Wine grape cytosol 39.16 41.77
VIT_05s0020g03170.t01 Wine grape cytosol 38.94 41.21
VIT_07s0141g00340.t01 Wine grape cytosol, plastid 26.43 38.4
VIT_07s0289g00010.t01 Wine grape cytosol 17.69 34.38
Protein Annotations
Gene3D:1.20.245.10EntrezGene:100241150wikigene:100241150MapMan:11.7.1.2Gene3D:2.60.60.20Gene3D:3.10.450.60
Gene3D:4.10.372.10Gene3D:4.10.375.10ProteinID:ACZ17393ProteinID:ACZ17393.1ProteinID:CBI35857ProteinID:CBI35857.3
UniProt:D7TZR1EMBL:FJ858257EMBL:FN596494GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0006629GO:GO:0006633GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016491GO:GO:0016702GO:GO:0031408GO:GO:0046872GO:GO:0051213
GO:GO:0055114InterPro:IPR001024InterPro:IPR013819InterPro:IPR027433EntrezGene:LOXOwikigene:LOXO
InterPro:LipOaseInterPro:LipOase_CInterPro:LipOase_CSInterPro:LipOase_C_sfInterPro:LipOase_Fe_BSInterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3PFAM:PF00305PFAM:PF01477InterPro:PLAT/LH2_domInterPro:PLAT/LH2_dom_sfPRINTS:PR00087
PRINTS:PR00468ScanProsite:PS00081ScanProsite:PS00711PFscan:PS50095PFscan:PS51393PANTHER:PTHR11771
PANTHER:PTHR11771:SF67SMART:SM00308SUPFAM:SSF48484SUPFAM:SSF49723TIGR:TC69809UniParc:UPI0001BE4A60
ArrayExpress:VIT_09s0002g01080EnsemblPlantsGene:VIT_09s0002g01080EnsemblPlants:VIT_09s0002g01080.t01unigene:Vvi.10605RefSeq:XP_002273258RefSeq:XP_002273258.2
SEG:seg:::::
Description
Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:D7TZR1]
Coordinates
chr9:+:812030..816741
Molecular Weight (calculated)
104809.0 Da
IEP (calculated)
8.105
GRAVY (calculated)
-0.343
Length
927 amino acids
Sequence
(BLAST)
001: MAVVKEIMGC SMVDGSSFVS SSKVLLNHGF QQRNQLLGRP LWVPLEKRGL HLRRVVRQPV AAVSEDLMKA SAVPAEKAVK FKVRAVLTVK KKNKEDLKET
101: LVKHLDSLTD KIGRNVVLEL ISTEIDPKTR APRKSTPAVV KDWSKKTNIK AERVNYTAEF TVDSNFGDPG AITVTNKHQK EFFLESITIE GFACGPVHFP
201: CNSWVQSKKD HPGKRLFFSN KPYLPGETPA GLRALREKEL RDLRGDGKGV RKSSDRIYDY DVYNDLGNPD NGINSARPML GGEKIPFPRR CRTGRPPSKT
301: DMHAESRVEL PFPMYVPRDE QFEEVKQDTF SDMRAKAVLH NLIPGLKASM LADKQDFKLF TDIDCLYKDD SKVGLHDEQL KKLPLPPKVI DTIQESRQGI
401: FRYNTPKILT KDKFAWLRDD EFARQAIAGI NPVNIEKLKV FPPVSNLDPE VHGPQESALK EEHIVGHLNG MTIEQALEEN KLFIVDFHDI YLPFLDRINS
501: LDGRKAYATR TIFFLTPVGT LKPIAIELSL PPSAPITRAK RVITPPVDAT SDWTWKLAKA HVCSNDAGVH QLVNHWLRTH ACMEPFILAA HRQLSAMHPI
601: FKLLDPHMRY TLEINGMARQ TLINADGVIE SCFTPGRYCM EISASAYKNF WRFDLEGLPA DLIRRGMAVP DPAQPHGLKL LIEDYPYAND GLLIWRAIEN
701: WVKTYVAHYY PSPSVVISDR ELQAWYSEAV NVGHADLRHA AWWPSLSTPD DLASILTTLI WLASAQHAAL NFGQYPYGGY VPNRPPLMRR LIPEPTDPEY
801: TNFLNDPQRY YLSALPGVLQ STSFMAVVDT LSTHSPDEEY IGERNHPSTW SGDAEIIEAS YEFSAEIRRI EKEIEKRNAE FSRRNRCGAG VLPYELLAPS
901: SGPGVTCRGI PNTLFSFCFC FCFFFLI
Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.