Factsheet for VIT_14s0128g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0128g00780.t01	Wine grape	cytosol	95.74	96.86
VIT_06s0004g01580.t01	Wine grape	cytosol	35.33	91.64
CDY70916	Canola	cytosol	44.99	77.58
PGSC0003DMT400028158	Potato	cytosol	75.26	75.87
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	74.91	75.61
KRH68548	Soybean	cytosol	73.07	74.01
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	73.3	73.9
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	72.61	73.37
PGSC0003DMT400063654	Potato	cytosol	41.43	73.32
Bra021322.1-P	Field mustard	cytosol	71.92	72.93
PGSC0003DMT400054145	Potato	cytosol	71.81	72.73
AT1G55020.1	Thale cress	cytosol	71.69	72.53
PGSC0003DMT400063446	Potato	cytosol	66.86	72.26
KRH33939	Soybean	cytosol, endoplasmic reticulum	71.92	72.25
PGSC0003DMT400063461	Potato	cytosol	57.08	71.47
Solyc01g099180.2.1	Tomato	cytosol	69.97	71.19
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	69.04	69.93
GSMUA_Achr1P22970_001	Banana	cytosol	67.89	69.74
PGSC0003DMT400063452	Potato	cytosol	63.75	69.34
Solyc01g099200.2.1	Tomato	cytosol, plastid	65.36	67.54
PGSC0003DMT400063469	Potato	cytosol	65.48	67.5
GSMUA_AchrUn_...	Banana	cytosol	66.4	67.49
PGSC0003DMT400063477	Potato	cytosol	66.17	67.17
Solyc01g099210.2.1	Tomato	cytosol	66.17	66.63
VIT_05s0020g03170.t01	Wine grape	cytosol	67.09	66.55
GSMUA_AchrUn_...	Banana	cytosol	59.84	66.33
GSMUA_Achr1P24370_001	Banana	cytosol	64.21	65.88
TraesCS6D01G122000.1	Wheat	cytosol	23.02	64.52
TraesCS4A01G275800.1	Wheat	cytosol	17.38	63.18
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	63.06	62.49
GSMUA_Achr6P25110_001	Banana	cytosol	56.85	62.22
GSMUA_Achr6P25090_001	Banana	cytosol	59.84	62.05
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	62.6	61.96
GSMUA_Achr9P19250_001	Banana	plasma membrane	67.78	61.93
Os03t0700400-00	Rice	cytosol, plasma membrane	8.98	61.9
TraesCS4B01G037800.1	Wheat	cytosol	62.26	61.62
TraesCS4A01G275900.1	Wheat	cytosol, unclear	62.14	61.5
TraesCS4D01G035100.1	Wheat	cytosol	62.14	61.5
TraesCS4A01G359800.1	Wheat	cytosol	37.05	60.64
EER93611	Sorghum	cytosol	61.56	60.25
TraesCS5A01G378800.2	Wheat	cytosol	53.74	60.03
Zm00001d033623_P003	Maize	cytosol	59.84	59.98
EER93612	Sorghum	cytosol	59.61	59.82
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	60.99	59.75
Zm00001d033624_P001	Maize	cytosol	60.41	59.19
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	58.23	58.77
TraesCS3B01G602500.1	Wheat	cytosol	59.49	58.68
TraesCS5A01G378700.1	Wheat	cytosol	58.34	58.68
TraesCS5B01G382400.1	Wheat	cytosol, golgi	57.77	58.64
Os03t0699700-01	Rice	cytosol, plastid	58.23	58.63
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	58.11	58.45
TraesCS5B01G382300.1	Wheat	cytosol, unclear	58.11	58.45
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	58.11	58.45
TraesCS4B01G037700.3	Wheat	cytosol, golgi	57.88	58.42
HORVU5Hr1G093770.1	Barley	cytosol	57.77	58.17
TraesCS4D01G035200.1	Wheat	cytosol	55.35	58.02
KXG37783	Sorghum	cytosol	59.49	57.89
TraesCS3B01G605700.1	Wheat	cytosol	58.92	57.85
TraesCS5B01G382600.1	Wheat	cytosol	57.19	57.72
Os03t0738600-01	Rice	plasma membrane, plastid	57.77	57.7
TraesCS5A01G378900.1	Wheat	cytosol	56.73	57.06
EES04025	Sorghum	cytosol	56.96	57.03
TraesCS6B01G160400.1	Wheat	mitochondrion	57.19	56.93
TraesCS6A01G132500.1	Wheat	mitochondrion	56.96	56.7
TraesCS6A01G132200.1	Wheat	mitochondrion	56.96	56.7
EES04028	Sorghum	cytosol	56.85	56.59
Zm00001d042540_P008	Maize	cytosol	57.08	55.61
Zm00001d042541_P002	Maize	cytosol	56.5	55.54
TraesCS5D01G388800.1	Wheat	cytosol	57.19	55.41
GSMUA_Achr6P25080_001	Banana	cytosol	49.37	55.35
TraesCS5A01G379000.1	Wheat	nucleus, unclear	48.79	55.06
TraesCS5D01G513100.1	Wheat	cytosol	54.43	54.49
Os11t0575600-01	Rice	mitochondrion	54.32	54.38
HORVU5Hr1G117110.1	Barley	cytosol	54.09	52.99
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	31.07	52.84
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	29.46	52.46
Solyc01g099150.2.1	Tomato	nucleus	52.01	52.44
TraesCS6B01G395700.1	Wheat	cytosol	48.91	52.34
CDY43490	Canola	cytosol, plasma membrane	71.81	51.87
VIT_13s0064g01500.t01	Wine grape	cytosol	14.38	50.0
VIT_00s0265g00170.t01	Wine grape	cytosol	28.19	48.51
TraesCS6D01G121900.1	Wheat	mitochondrion	24.86	48.32
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	35.21	47.96
VIT_13s0064g01490.t01	Wine grape	cytosol	21.86	47.62
VIT_06s0004g01500.t01	Wine grape	cytosol	42.0	46.14
VIT_06s0004g01480.t01	Wine grape	cytosol	41.66	45.65
VIT_07s0289g00010.t01	Wine grape	cytosol	24.51	44.65
VIT_06s0004g01460.t01	Wine grape	plastid	30.49	44.31
VIT_13s0064g01480.t01	Wine grape	plastid	43.96	42.3
VIT_06s0004g01510.t01	Wine grape	plastid	43.84	42.29
VIT_06s0004g01470.t01	Wine grape	cytosol	43.84	42.19
VIT_01s0010g02750.t01	Wine grape	plastid	43.73	41.3
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	40.39	40.86
VIT_09s0002g01080.t01	Wine grape	cytosol	41.77	39.16
GSMUA_Achr6P25100_001	Banana	cytosol	48.68	3.52

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100252850	wikigene:100252850	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	MapMan:50.1.12	ProteinID:CCB59925	ProteinID:CCB59925.1	UniProt:F6HZ11	EMBL:FN596501
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	EntrezGene:LOC100252850	wikigene:LOC100252850	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI0002109FEC	ArrayExpress:VIT_14s0128g00790	EnsemblPlantsGene:VIT_14s0128g00790	EnsemblPlants:VIT_14s0128g00790.t01	RefSeq:XP_002280651
RefSeq:XP_002280651.1	SEG:seg	:	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6HZ11]

Coordinates

chr14:+:3318257..3322994

Molecular Weight (calculated)

99302.8 Da

IEP (calculated)

5.929

GRAVY (calculated)

-0.419

Length

869 amino acids

Sequence
(BLAST)

001: MDMMMMMMKK KLLSIVSAIT GENDKKKIEG TIVLMKKNVL DFNDFNAPVR DRVHELFGQG VSLQLVSAVH GDPANGLQGK IGKPAYLEDW IITITSLTAG
101: ESAFKVTFDW DEEIGEPGAF IIRNNHHSEF YLRTLTLEDV PGRGRIHFVC NSWVYPAQHY KTDRVFFTNQ TYLPSETPGP LRKYREGELV NLRGDGTGKL
201: KEWDRVYDYA YYNDLGNPDR DLKYARPVLG GSAEYPYPRR GRTGRPPSEK DPNTESRLPL VMSLNMYVPR DERFGHLKMS DFLAYALKSI VQFLLPEFEA
301: LCDITHNEFD SFQDVLDLYE GGIKVPEGPL LDKIKDNIPL EMLKELVRTD GEHLFKFPMP QVIKEDKSAW RTDEEFAREM LAGLNPVVIR LLQEFPPKSK
401: LDPEIYGNQN SSITKEHIEN HLDDLTINEA MEKKRLFILD HHDVFMQYLR RINTTSTKTY ASRTLLFLKD DGTLKPLAIE LSLPHPSGDK FGAVNKVYTP
501: AENGVEGSIW QLAKAYAAVN DSGYHQLLSH WLNTHAAIEP FVIATNRQLS VLHPIHKLLH PHFRDTMNIN ALARQILINA GGVVESTVFP SKYAMEMSSV
601: VYKDWVLTEQ ALPADLIKRG MAVEDSEAPH GLRLLIDDYP YAVDGLEIWS AIETWVKEYC SFYYKTDEMV QKDSELQSWW KEVREEGHGD KKDEPWWPKM
701: HTVKELIETC TIIIWVASAL HAAVNFGQYP YAGYLPNRPT ISRRFMPEEG TPEYEELKSN PDKAFLKTIT AQLQTLLGIS LIEILSRHSS DEVYLGQRDT
801: PEWTLDTTPL KAFEKFGRKL ADIEERIIDR NGNERFKNRV GPVKIPYTLL YPTSEGGITG KGIPNSVSI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.