Factsheet for TraesCS4D01G035200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G275800.1	Wheat	cytosol	27.99	97.07
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	96.5	92.92
TraesCS4B01G037700.3	Wheat	cytosol, golgi	96.14	92.57
Os03t0700400-00	Rice	cytosol, plasma membrane	12.3	80.95
Zm00001d033623_P003	Maize	cytosol	84.2	80.51
EER93612	Sorghum	cytosol	82.75	79.21
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	73.1	70.14
TraesCS6D01G122000.1	Wheat	cytosol	26.18	70.0
TraesCS5D01G388800.1	Wheat	cytosol	72.14	66.67
TraesCS5D01G513100.1	Wheat	cytosol	67.67	64.63
TraesCS4D01G035100.1	Wheat	cytosol	68.03	64.24
KRH16725	Soybean	cytosol	16.89	60.61
GSMUA_Achr1P22970_001	Banana	cytosol	60.68	59.46
KRH35534	Soybean	cytosol	31.24	57.81
KRH62399	Soybean	cytosol, endoplasmic reticulum	16.28	57.2
CDY70916	Canola	cytosol	34.62	56.94
VIT_14s0128g00780.t01	Wine grape	cytosol	58.75	56.69
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	58.38	56.21
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	58.26	56.03
PGSC0003DMT400028158	Potato	cytosol	58.02	55.8
KRH57987	Soybean	cytosol	17.25	55.43
PGSC0003DMT400063654	Potato	cytosol	32.81	55.4
VIT_14s0128g00790.t01	Wine grape	cytosol	58.02	55.35
PGSC0003DMT400081370	Potato	cytosol	58.5	55.3
Solyc09g075860.2.1	Tomato	cytosol, nucleus	58.26	55.07
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	57.06	55.0
Bra021322.1-P	Field mustard	cytosol	56.82	54.96
PGSC0003DMT400054145	Potato	cytosol	56.57	54.66
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.96	54.63
TraesCS6D01G121900.1	Wheat	mitochondrion	29.43	54.59
AT1G55020.1	Thale cress	cytosol	56.21	54.25
KRG91271	Soybean	cytosol	55.85	53.96
PGSC0003DMT400063477	Potato	cytosol	55.49	53.74
Solyc09g075870.1.1	Tomato	cytosol	55.25	53.63
KRH68548	Soybean	cytosol	55.49	53.61
PGSC0003DMT400063446	Potato	cytosol	51.87	53.48
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	55.25	53.38
Solyc01g099210.2.1	Tomato	cytosol	55.49	53.3
VIT_05s0020g03170.t01	Wine grape	cytosol	56.21	53.2
Solyc01g099180.2.1	Tomato	cytosol	54.52	52.93
KRH23266	Soybean	cytosol	52.59	52.78
KRH33939	Soybean	cytosol, endoplasmic reticulum	54.76	52.49
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.76	52.42
KRH10050	Soybean	endoplasmic reticulum	54.16	52.39
KRH44090	Soybean	endoplasmic reticulum	54.16	52.21
Solyc01g099200.2.1	Tomato	cytosol, plastid	52.96	52.2
KRH44093	Soybean	endoplasmic reticulum	53.08	52.01
PGSC0003DMT400063469	Potato	cytosol	52.83	51.96
AT3G22400.1	Thale cress	cytosol	54.89	51.35
PGSC0003DMT400063452	Potato	cytosol	49.46	51.31
KRH47522	Soybean	endoplasmic reticulum, nucleus	53.44	51.21
KRH10051	Soybean	endoplasmic reticulum, nucleus	52.83	51.17
KRH44095	Soybean	endoplasmic reticulum	53.44	51.15
CDY46325	Canola	cytosol	54.4	51.13
KRH44094	Soybean	endoplasmic reticulum	53.44	51.1
PGSC0003DMT400063461	Potato	cytosol	42.7	51.01
KRH47069	Soybean	endoplasmic reticulum	27.99	50.99
KRH47525	Soybean	endoplasmic reticulum	53.32	50.92
KRH44097	Soybean	cytosol, endoplasmic reticulum	53.32	50.92
Bra039948.1-P	Field mustard	cytosol	54.4	50.85
KRH47066	Soybean	endoplasmic reticulum, nucleus	52.47	50.64
CDY38326	Canola	cytosol	54.04	50.51
KRG88464	Soybean	cytosol	27.74	50.44
KRH10053	Soybean	endoplasmic reticulum	51.87	50.41
Bra023829.1-P	Field mustard	cytosol	54.52	50.06
KRH47067	Soybean	endoplasmic reticulum	51.99	49.88
CDY64191	Canola	cytosol	54.4	49.72
KRH23269	Soybean	endoplasmic reticulum	49.22	49.63
KRH23268	Soybean	endoplasmic reticulum	51.03	49.59
VIT_06s0004g01580.t01	Wine grape	cytosol	20.02	49.55
KRH13357	Soybean	endoplasmic reticulum	14.35	49.17
KRH44092	Soybean	nucleus	47.65	46.09
KRH47064	Soybean	endoplasmic reticulum	31.24	45.44
TraesCS7D01G029400.1	Wheat	cytosol	14.11	44.15
TraesCS1D01G215800.2	Wheat	cytosol	44.87	43.97
Solyc01g099150.2.1	Tomato	nucleus	41.25	39.68
CDY43490	Canola	cytosol, plasma membrane	56.69	39.07
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	23.16	37.57
TraesCS2D01G313400.1	Wheat	plastid	41.13	37.47
TraesCS4D01G347300.1	Wheat	cytosol	39.57	37.06
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	40.29	36.62
TraesCS4D01G294100.1	Wheat	plastid	39.93	35.9
TraesCS6D01G154600.1	Wheat	plastid	38.84	35.74
TraesCS7D01G244800.1	Wheat	plastid	40.05	35.62
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	39.57	35.38
TraesCS5D01G013400.1	Wheat	plastid	39.32	35.13
TraesCS5D01G041100.1	Wheat	plastid	37.52	32.91
TraesCS6D01G010100.1	Wheat	plastid	37.27	32.91

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF49	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS4D01G035200
EnsemblPlants:TraesCS4D01G035200.1	TIGR:cd01751	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:15912211..15916073

Molecular Weight (calculated)

92693.5 Da

IEP (calculated)

6.149

GRAVY (calculated)

-0.274

Length

829 amino acids

Sequence
(BLAST)

001: MILGGLIDSL TGANKNARLK GTAVLMRKNV LDLTDFGATI MDGIGDFLGK GVTCQLISST LIDHDNGGRG KVGAEAELEQ WVTSLPSLTT GESKFGLTFD
101: WEVEKLGVPG AIVVNNYHSS EFLLKTVTLH DVPGRGNLSF VANSWIYPAA TYTYSRVFFA NDTYLPSQMP AALKPYRDDE LRNLRGDDRQ GPYQEHDRVY
201: RYDVYNDLGE GRPVLGGSAE HPYPRRGRTG RKPNASDPSL ESRLSLLEQI YVPRDEKFGH LKTSDFLGYS IKAITQGILP AVRTYVDTTP GEFDSFQDIM
301: NLYEGGIKLP MVPALEELRK QFPLQLIKDL LPVGGDSLLK LPVPHIIQAD QQAWRTDEEF AREVLAGVNP VMITRLTEFP PKSSLDPSKF GDHTSTITAA
401: HIQKNLEGLT VQQALESNRL YILDHHDRFM PFLIEVNNLP GNFIYATRTL FFLRGDGSVE GWVWEFAKAY VAVNDSGWHQ LVSHWLNTHA VMEPFVISTN
501: RHLSVTHPVH KLLSPHYRDT MTINALARQT LINAGGIFEM TVFPGKFALG MSSVVYKDWK FTEQGLPDDL IKRGMAVEDL SSPYKVRLLV SDYPYAADGL
601: AIWHAIEQYV GEYLAIYYPD DGVLRGDTEL QAWWKEAREV GHGDLKDAPW WPRMQGVGEL AKACTTIIWI GSALHAAVNF GQYPYAGFLP NRPTVSRRRM
701: PEPGTDAYAE LERDPERAFI HTITSQIQTI IGISLLEVLS KHSSDELYLG QRDTPEWTSD PKALEVFKRF SERLVEIESK VVGMNHDPQL LNRNGPAKLP
801: YMLLYPNTSD HKGAAAGLTA KGIPNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.