Factsheet for TraesCS4D01G347300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G244800.1	Wheat	plastid	85.42	81.12
OQU80925	Sorghum	cytosol	73.67	75.38
Zm00001d031449_P001	Maize	mitochondrion	74.01	68.51
Os08t0509100-01	Rice	nucleus	72.43	68.12
Os08t0508800-01	Rice	nucleus, plasma membrane	70.73	67.75
VIT_13s0064g01500.t01	Wine grape	cytosol	18.53	65.6
CDY61034	Canola	cytosol	30.62	60.63
CDY72550	Canola	cytosol	21.92	60.44
Solyc01g009680.2.1	Tomato	plastid	30.06	60.05
CDY07409	Canola	cytosol	26.1	59.69
VIT_06s0004g01500.t01	Wine grape	cytosol	52.09	58.28
VIT_13s0064g01490.t01	Wine grape	cytosol	26.21	58.15
GSMUA_Achr9P12470_001	Banana	plastid	55.03	57.77
VIT_06s0004g01480.t01	Wine grape	cytosol	51.53	57.5
PGSC0003DMT400020118	Potato	cytosol	43.5	55.56
VIT_13s0064g01480.t01	Wine grape	plastid	55.93	54.82
CDY70843	Canola	cytosol	7.8	54.76
VIT_06s0004g01460.t01	Wine grape	plastid	36.72	54.35
CDY61881	Canola	cytosol	21.69	54.08
KRG89889	Soybean	cytosol, plastid	50.85	52.33
VIT_06s0004g01470.t01	Wine grape	cytosol	53.33	52.27
KRH29669	Soybean	plastid	52.88	51.94
KRG89883	Soybean	cytosol, plastid	50.4	51.92
Solyc01g006560.2.1	Tomato	plastid	52.66	51.66
KRH29668	Soybean	nucleus	52.77	51.55
KRH24671	Soybean	cytosol, plastid	53.22	51.53
Solyc01g006540.2.1	Tomato	plastid	51.98	51.34
PGSC0003DMT400081909	Potato	plastid	52.09	51.28
VIT_06s0004g01510.t01	Wine grape	plastid	51.98	51.05
TraesCS6D01G154600.1	Wheat	plastid	51.75	50.83
TraesCS7D01G029400.1	Wheat	cytosol	15.14	50.57
KRG89888	Soybean	nucleus	51.3	50.28
KRH18682	Soybean	cytosol, mitochondrion	51.75	50.27
Solyc12g011040.1.1	Tomato	nucleus, plastid	50.4	50.0
KRH17965	Soybean	plastid	51.75	49.89
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	48.36	49.83
CDY04196	Canola	plastid	49.15	48.93
CDX91565	Canola	plastid	49.49	48.67
CDX79416	Canola	plastid	49.38	48.34
AT3G45140.1	Thale cress	plastid	48.93	48.33
Bra004057.1-P	Field mustard	cytosol	48.59	48.26
CDX67920	Canola	plastid	49.27	48.23
Bra003526.1-P	Field mustard	plastid	49.15	48.12
Bra004059.1-P	Field mustard	plastid	46.89	47.92
CDY16339	Canola	plastid	41.02	47.7
Bra004060.1-P	Field mustard	plastid	48.36	47.61
CDY61036	Canola	plastid	47.57	47.36
Bra022535.1-P	Field mustard	plastid	42.94	46.86
TraesCS5D01G013400.1	Wheat	plastid	48.59	46.34
TraesCS5D01G041100.1	Wheat	plastid	47.91	44.87
TraesCS6D01G122000.1	Wheat	cytosol	15.71	44.84
TraesCS6D01G010100.1	Wheat	plastid	46.55	43.88
TraesCS2D01G313400.1	Wheat	plastid	42.6	41.43
TraesCS4D01G294100.1	Wheat	plastid	42.82	41.11
CDY61880	Canola	plastid	25.42	40.83
Bra004058.1-P	Field mustard	plastid	48.81	40.83
TraesCS1D01G215800.2	Wheat	cytosol	38.42	40.19
CDY07407	Canola	cytosol, plastid	49.38	39.84
TraesCS4D01G035200.1	Wheat	cytosol	37.06	39.57
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	38.42	39.35
TraesCS4D01G035100.1	Wheat	cytosol	38.87	39.18
TraesCS5D01G513100.1	Wheat	cytosol	37.4	38.13
TraesCS5D01G388800.1	Wheat	cytosol	38.64	38.13
CDY07408	Canola	plastid	19.43	37.55
CDY70245	Canola	plastid	19.1	36.9
CDY70606	Canola	plastid	16.05	35.95
CDY61882	Canola	plastid	14.69	33.59
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	33.79	32.79
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	33.67	32.15
TraesCS6D01G121900.1	Wheat	mitochondrion	16.16	31.99

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF66	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS4D01G347300	EnsemblPlants:TraesCS4D01G347300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:501167616..501179091

Molecular Weight (calculated)

99206.7 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.346

Length

885 amino acids

Sequence
(BLAST)

001: MKVLLVVKKY CYLKGRLKPV KALLVDSPLG GFLDGLRPSR TMDDVKDLIG RSMELELVSA DLDAETGKEK QTIKSYARKV ADKDRHIVTY EAGFNVPAGF
101: GSVGAVLVTN EHDTEMFLKD VKLIGGGNSD SEPHVILCDS WLPPKSGDGK RIFFANKVIR SGPRQAILQL KFVNAELLIN VPTTVQPYLP SQTPPGLQSY
201: RKKDLVKKRG DGTGQRKATD RVYDYDVYND LGSGEEPGAG GARSVLGGNE QFPYPRRCRT GRPRSIKDPQ SEMRSGDVYV PRDEAFSEEK NVQFSVKTLQ
301: SVLHAVVPAV QSTLIDANQG FPSFFVIDKL FEDGVVLPRA REVGFLRSAV PRLLQFLRDG LGDKLLLFDR PANVKKDKFA WLRDEEFARE TLAGMNPYAI
401: ELVREFPLKS NLDPAEYGPA ESAITAELLE AQMGHTMTVA EAVEKKRLFM LDFHDLFLPY VHKIRALEHT TMYGSRTILF LTDEGTLRLL AIELTRPASP
501: TMPQWRQVFT SSTDTTKSWL WRMAKSHVRA RDAGHHELVT HWLRTHCAVE PYILAANRQL SEMHPVYQLL RPHFRYTMRI NALARSALVN GGGIIESTFS
601: PQRYGMELSS VAYDKLWRFD MEALPADLVR RGMAEEDPTA EHGLRFAIKD YPFANDGLLI WDAIKGWVQA YVSRYYRGDA ASVTGDTELQ AFWTEVRTEG
701: HADKKGAPWW PKLDTPETLA HTLTTIIWVA AAHHAAVNFG QYDFGGYFPN RPSIARTKMP VEEPVDAAAL EKFLDNPDEA LRECFPSQLQ ATLVMAVLDV
801: LSSHSPDEEY LGGMETAPWG DDTEVRAAYT RFNDQLKAVE GIIDERNKNR MLKNRCGAGI LPYQLMKPFS EPGVTGKGIP NSTSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.