CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH08499
KRH33614
KRH70165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	KRH08499	AT5G18110.1	11117257
AT3G45140.1	KRH70165	AT5G18110.1	11117257
AT3G45140.1	KRG90357	AT5G35620.1	11117257
AT3G45140.1	KRH33614	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89889	Soybean	cytosol, plastid	84.39	88.6
KRG89883	Soybean	cytosol, plastid	71.76	75.44
KRH17965	Soybean	plastid	74.2	72.98
KRH18682	Soybean	cytosol, mitochondrion	70.65	70.03
Solyc01g009680.2.1	Tomato	plastid	33.0	67.27
Os12t0559934-00	Rice	cytosol	13.95	64.62
VIT_06s0004g01500.t01	Wine grape	cytosol	56.37	64.35
VIT_06s0004g01480.t01	Wine grape	cytosol	55.92	63.68
PGSC0003DMT400020118	Potato	cytosol	48.62	63.35
CDY72550	Canola	cytosol	21.48	60.44
CDY61034	Canola	cytosol	29.9	60.4
KRH29669	Soybean	plastid	60.02	60.16
KRH29668	Soybean	nucleus	60.13	59.93
VIT_06s0004g01510.t01	Wine grape	plastid	59.69	59.82
CDY07409	Canola	cytosol	25.58	59.69
HORVU3Hr1G047210.1	Barley	cytosol	14.29	59.45
KRH24671	Soybean	cytosol, plastid	59.91	59.19
VIT_06s0004g01470.t01	Wine grape	cytosol	58.91	58.91
VIT_06s0004g01460.t01	Wine grape	plastid	38.87	58.7
Solyc01g006540.2.1	Tomato	plastid	57.59	58.04
Solyc01g006560.2.1	Tomato	plastid	57.7	57.76
GSMUA_Achr9P12470_001	Banana	plastid	53.82	57.65
PGSC0003DMT400081909	Potato	plastid	57.36	57.62
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	52.93	55.65
Solyc12g011040.1.1	Tomato	nucleus, plastid	54.93	55.61
OQU80925	Sorghum	cytosol	51.83	54.1
CDY61881	Canola	cytosol	21.15	53.8
GSMUA_Achr3P11780_001	Banana	plastid	50.28	53.66
CDY70843	Canola	cytosol	7.42	53.17
HORVU7Hr1G050680.1	Barley	peroxisome	39.76	52.49
HORVU6Hr1G033600.1	Barley	plastid	51.05	51.45
TraesCS4D01G347300.1	Wheat	cytosol	50.28	51.3
TraesCS7B01G145200.1	Wheat	plastid	52.49	51.08
TraesCS7D01G244800.1	Wheat	plastid	52.49	50.86
TraesCS6B01G193400.1	Wheat	plastid	50.61	50.72
Zm00001d053675_P001	Maize	plastid	50.83	50.72
CDX91565	Canola	plastid	50.5	50.67
Os08t0508800-01	Rice	nucleus, plasma membrane	51.83	50.65
CDY04196	Canola	plastid	49.83	50.62
TraesCS7A01G246200.1	Wheat	plastid	52.16	50.59
TraesCS6D01G154600.1	Wheat	plastid	50.39	50.5
KXG29701	Sorghum	plastid	51.16	50.38
CDX67920	Canola	plastid	50.39	50.33
TraesCS6A01G166000.1	Wheat	golgi	50.17	50.28
AT3G45140.1	Thale cress	plastid	49.83	50.22
Bra003526.1-P	Field mustard	plastid	50.28	50.22
Os08t0509100-01	Rice	nucleus	52.27	50.16
CDX79416	Canola	plastid	50.06	50.0
Bra004057.1-P	Field mustard	cytosol	49.17	49.83
CDY16339	Canola	plastid	41.86	49.67
Bra004059.1-P	Field mustard	plastid	47.62	49.65
Zm00001d015852_P004	Maize	plastid	50.06	49.62
CDY61036	Canola	plastid	48.84	49.61
Zm00001d031449_P001	Maize	mitochondrion	52.49	49.58
Bra004060.1-P	Field mustard	plastid	49.28	49.5
TraesCS7D01G029400.1	Wheat	cytosol	14.51	49.43
Bra022535.1-P	Field mustard	plastid	44.3	49.32
Os02t0194700-01	Rice	plasma membrane	50.5	49.24
TraesCS6B01G014400.1	Wheat	cytosol	32.56	48.92
TraesCS7A01G034900.1	Wheat	mitochondrion	15.73	48.46
KRH35534	Soybean	cytosol	23.92	48.21
TraesCS5B01G006500.1	Wheat	plastid	48.28	46.98
TraesCS5D01G013400.1	Wheat	plastid	48.28	46.98
TraesCS5A01G007900.1	Wheat	plastid	48.06	46.77
HORVU5Hr1G001180.1	Barley	plastid	47.84	46.4
HORVU7Hr1G006320.4	Barley	plastid	47.18	45.95
KRH42646	Soybean	plastid	46.84	45.93
TraesCS6D01G010100.1	Wheat	plastid	47.07	45.26
CDY61880	Canola	plastid	27.57	45.19
Os12t0559200-01	Rice	plastid	45.74	44.79
HORVU6Hr1G000510.1	Barley	plastid	46.18	44.74
KRH47615	Soybean	nucleus	45.63	44.44
KRH06197	Soybean	nucleus	45.29	44.36
KRH10882	Soybean	cytosol	21.26	44.24
KRH68548	Soybean	cytosol	41.86	44.06
KRH69027	Soybean	plastid	43.85	43.95
TraesCS5D01G041100.1	Wheat	plastid	45.85	43.81
KRG97300	Soybean	plastid	43.3	43.49
TraesCS5B01G033000.1	Wheat	plastid	45.51	43.26
KRH47069	Soybean	endoplasmic reticulum	21.71	43.08
KRH23268	Soybean	endoplasmic reticulum	40.53	42.91
KRH33939	Soybean	cytosol, endoplasmic reticulum	40.97	42.77
KRH10053	Soybean	endoplasmic reticulum	40.31	42.67
KRH10051	Soybean	endoplasmic reticulum, nucleus	40.42	42.64
KRG91271	Soybean	cytosol	40.42	42.54
Bra004058.1-P	Field mustard	plastid	49.72	42.44
KRH44093	Soybean	endoplasmic reticulum	39.76	42.44
Os12t0560200-00	Rice	cytosol	4.65	42.42
KRH44094	Soybean	endoplasmic reticulum	40.64	42.33
KRH44095	Soybean	endoplasmic reticulum	40.42	42.15
KRH47066	Soybean	endoplasmic reticulum, nucleus	40.09	42.14
KRH10050	Soybean	endoplasmic reticulum	39.87	42.01
KRH44092	Soybean	nucleus	39.87	42.01
KRH16725	Soybean	cytosol	10.74	41.99
KRH44090	Soybean	endoplasmic reticulum	39.98	41.98
KRH47067	Soybean	endoplasmic reticulum	40.09	41.9
KRH23266	Soybean	cytosol	38.32	41.89
KRH62403	Soybean	cytosol, endoplasmic reticulum	10.52	41.85
KRH23269	Soybean	endoplasmic reticulum	38.1	41.85
KRH44097	Soybean	cytosol, endoplasmic reticulum	39.98	41.59
KRH47525	Soybean	endoplasmic reticulum	39.98	41.59
CDY07407	Canola	cytosol, plastid	49.94	41.11
KRH57987	Soybean	cytosol	11.74	41.09
KRH23265	Soybean	endoplasmic reticulum, nucleus	39.31	40.99
KRH62399	Soybean	cytosol, endoplasmic reticulum	10.63	40.68
KRH50048	Soybean	cytosol	40.97	40.66
CDY07408	Canola	plastid	20.6	40.61
KRH47522	Soybean	endoplasmic reticulum, nucleus	38.87	40.58
CDY70245	Canola	plastid	20.49	40.39
KRH21441	Soybean	cytosol	39.53	39.23
TraesCS5A01G032800.1	Wheat	mitochondrion	37.1	39.0
KRH47064	Soybean	endoplasmic reticulum	24.58	38.95
CDY70606	Canola	plastid	16.94	38.73
KRH13357	Soybean	endoplasmic reticulum	10.3	38.43
CDY61882	Canola	plastid	16.28	37.98
KRG88464	Soybean	cytosol	18.83	37.28
KRH66214	Soybean	cytosol	35.11	36.61
KRH07345	Soybean	cytosol, plastid	34.88	36.59
KRH30640	Soybean	cytosol	7.31	35.29

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:106794093	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02012304	EnsemblPlantsGene:GLYMA_20G054000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1NE45	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRG89888
ProteinID:KRG89888	ProteinID:KRG89888.1	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000233DE4F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:12411426..12423228

Molecular Weight (calculated)

102823.0 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.475

Length

903 amino acids

Sequence
(BLAST)

001: MHNKIYSHIC HMNIGSCFLS QGKLSFPASS NIRVPREVRI GCVSRHVKAV MRKKSGTSNN NPNKAQNAKA IVIVKRSGGG GLLTNLVRDG VEGIEELVGK
101: TLILELVSNE LDSKTNLEKK TIKGDAHKTE EKEDEVYYEA TFELPTEFGK VGAVLVENEH HNEMFLKSIV FDGFPDGPVH LTCDSWVQPK YDNPVKRVFF
201: TDKSYLPSQT PSGLRRLREE ELELLRGNGE GERKSSDRIY DYDVYNDLGD PDSNINLKRP VLGGSKQYPY PRRCRTGREH TDSDPSSEKR SLDFYVPRDE
301: TFSDVKQSQF TMSTISSGLS AILESLDAIL TDQNLGFRSF EDIDTIYKEG FKLPPLKGNG LNFLQRTVPR LIEAANDSQN LLRFDTPETL KRDKFFWFSD
401: EEFARETLAG VNPYSIQLVK EWPLRSKLES QIYGPPESAI TREVIEPHIL GYGTIEEAIK EKKLYMLDYH DLLLPYVSKV REIEGTTLYG SRTLFFLTKQ
501: GTLKPLAIEL TRPPIDGKPQ WKQVFTPASY SISHSTNLWL WRLAKAHVLA HDAGVHELIN HWLRTHAVME PFVVATNRQL SVMHPIYKLL HPHLTYTLAI
601: NSLAREILIN GNGIIEKSFS PNKYSMELSS AAYDQLWRFD LQALPNDLID RGIAVVDPNA PHGLKLTIED YPFANDGLLI WDAIKQWITE YVNHYYPTPS
701: IIESDQELQP WWTEIRTVGH GDKSEEPWWP NLKTPKDLID IITTIAWTAS AHHAAVNFTQ YTYGGYFPNR PNIVRTKIPT EDPSKEEWET FLNNPEQTLL
801: ESFPSQIQAT TMMLVFNILS YHSPDEEYIG QYLKPSWAED PTIKASFERF NGRLKEIEGI IDSRNADCNM KNRHGVGVVP YEQMKPFSGP GITGKGIPYS
901: VSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.