Factsheet for PGSC0003DMT400081909

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 17210991

gfp PMID: 17210991 doi

T Farmaki, M Sanmartín, P Jiménez, M Paneque, C Sanz, G Vancanneyt, J León, JJ Sánchez-Serrano

Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Campus de Cantoblanco, Universidad Autónoma de Madrid, Carretera de Colmenar Viejo km 15,500. 28049 Madrid, Spain. mfarmaki@certh.gr

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400044186
PGSC0003DMT400060836

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	PGSC0003DMT400060836	AT5G18110.1	11117257
AT3G45140.1	PGSC0003DMT400044186	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006540.2.1	Tomato	plastid	92.77	93.08
PGSC0003DMT400020118	Potato	cytosol	63.63	82.54
CDY72550	Canola	cytosol	24.03	67.29
VIT_06s0004g01500.t01	Wine grape	cytosol	59.18	67.26
Os12t0559934-00	Rice	cytosol	14.57	67.18
CDY61034	Canola	cytosol	32.7	65.77
CDY07409	Canola	cytosol	28.25	65.63
VIT_06s0004g01480.t01	Wine grape	cytosol	57.62	65.32
VIT_06s0004g01510.t01	Wine grape	plastid	65.07	64.93
HORVU3Hr1G047210.1	Barley	cytosol	15.57	64.52
KRH29669	Soybean	plastid	63.96	63.82
CDY70843	Canola	cytosol	8.79	62.7
VIT_06s0004g01470.t01	Wine grape	cytosol	62.74	62.46
VIT_06s0004g01460.t01	Wine grape	plastid	41.49	62.37
KRH29668	Soybean	nucleus	62.85	62.36
KRH24671	Soybean	cytosol, plastid	63.07	62.03
CDY61881	Canola	cytosol	24.14	61.13
KRG89883	Soybean	cytosol, plastid	58.4	61.12
GSMUA_Achr3P11780_001	Banana	plastid	56.17	59.69
KRG89889	Soybean	cytosol, plastid	55.95	58.49
GSMUA_Achr9P12470_001	Banana	plastid	53.84	57.41
KRG89888	Soybean	nucleus	57.62	57.36
PGSC0003DMT400034472	Potato	cytosol	28.36	57.05
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	54.06	56.58
AT3G45140.1	Thale cress	plastid	56.28	56.47
Zm00001d053675_P001	Maize	plastid	56.73	56.35
KRH17965	Soybean	plastid	57.51	56.32
KRH18682	Soybean	cytosol, mitochondrion	57.06	56.31
CDX79416	Canola	plastid	56.06	55.75
CDX67920	Canola	plastid	55.95	55.64
CDY04196	Canola	plastid	54.95	55.57
Bra003526.1-P	Field mustard	plastid	55.84	55.53
HORVU6Hr1G033600.1	Barley	plastid	55.17	55.36
OQU80925	Sorghum	cytosol	53.06	55.14
CDX91565	Canola	plastid	55.06	55.0
Bra004057.1-P	Field mustard	cytosol	54.51	54.99
TraesCS6B01G193400.1	Wheat	plastid	55.06	54.94
KXG29701	Sorghum	plastid	55.73	54.63
Bra004059.1-P	Field mustard	plastid	52.61	54.62
TraesCS6A01G166000.1	Wheat	golgi	54.73	54.61
TraesCS6D01G154600.1	Wheat	plastid	54.73	54.61
Zm00001d015852_P004	Maize	plastid	54.95	54.23
Os02t0194700-01	Rice	plasma membrane	55.73	54.1
HORVU7Hr1G050680.1	Barley	peroxisome	41.16	54.09
CDY61036	Canola	plastid	53.17	53.77
Bra004060.1-P	Field mustard	plastid	53.62	53.62
CDY16339	Canola	plastid	45.27	53.48
Bra022535.1-P	Field mustard	plastid	47.72	52.9
TraesCS7D01G029400.1	Wheat	cytosol	15.57	52.83
TraesCS4D01G347300.1	Wheat	cytosol	51.28	52.09
TraesCS7A01G246200.1	Wheat	plastid	53.84	51.99
TraesCS7B01G145200.1	Wheat	plastid	53.62	51.94
TraesCS7D01G244800.1	Wheat	plastid	53.84	51.93
Os08t0508800-01	Rice	nucleus, plasma membrane	53.06	51.62
TraesCS6B01G014400.1	Wheat	cytosol	34.04	50.92
Os08t0509100-01	Rice	nucleus	53.06	50.69
Zm00001d031449_P001	Maize	mitochondrion	53.39	50.21
TraesCS5D01G013400.1	Wheat	plastid	51.5	49.89
TraesCS5B01G006500.1	Wheat	plastid	51.5	49.89
TraesCS5A01G007900.1	Wheat	plastid	51.39	49.78
HORVU5Hr1G001180.1	Barley	plastid	51.5	49.73
TraesCS7A01G034900.1	Wheat	mitochondrion	15.8	48.46
CDY61880	Canola	plastid	29.14	47.55
HORVU6Hr1G000510.1	Barley	plastid	49.17	47.42
HORVU7Hr1G006320.4	Barley	plastid	48.83	47.36
PGSC0003DMT400063654	Potato	cytosol	25.58	46.84
PGSC0003DMT400045047	Potato	cytosol, plastid	47.39	46.81
Bra004058.1-P	Field mustard	plastid	54.28	46.12
Os12t0559200-01	Rice	plastid	47.27	46.1
TraesCS6D01G010100.1	Wheat	plastid	48.05	46.01
PGSC0003DMT400074322	Potato	cytosol	22.14	45.02
CDY70245	Canola	plastid	22.91	44.98
CDY07407	Canola	cytosol, plastid	54.84	44.94
TraesCS5D01G041100.1	Wheat	plastid	47.16	44.87
TraesCS5B01G033000.1	Wheat	plastid	47.27	44.74
PGSC0003DMT400058933	Potato	plastid	45.27	44.53
PGSC0003DMT400054145	Potato	cytosol	41.38	43.36
PGSC0003DMT400063477	Potato	cytosol	41.27	43.34
CDY07408	Canola	plastid	22.02	43.23
PGSC0003DMT400028158	Potato	cytosol	40.93	42.69
PGSC0003DMT400063469	Potato	cytosol	39.49	42.11
PGSC0003DMT400081370	Potato	cytosol	40.49	41.51
Os12t0560200-00	Rice	cytosol	4.56	41.41
PGSC0003DMT400063446	Potato	cytosol	36.82	41.17
CDY70606	Canola	plastid	18.02	41.01
TraesCS5A01G032800.1	Wheat	mitochondrion	39.15	40.98
CDY61882	Canola	plastid	17.35	40.31
PGSC0003DMT400063461	Potato	cytosol	30.7	39.77
PGSC0003DMT400063452	Potato	cytosol	35.04	39.42
PGSC0003DMT400074324	Potato	cytosol	11.01	28.61

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
ProteinID:CAA65268	ProteinID:CAA65268.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0010597	GO:GO:0016165
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1D597	PFAM:PF00305
PFAM:PF01477	EnsemblPlantsGene:PGSC0003DMG400032155	PGSC:PGSC0003DMG400032155	EnsemblPlants:PGSC0003DMT400081909	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000294E8C2
EMBL:X96405	SEG:seg	:	:	:	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400032155]

Coordinates

chr1:+:2132539..2146050

Molecular Weight (calculated)

101980.0 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.401

Length

899 amino acids

Sequence
(BLAST)

001: MLKPQLQQSL QSTKTLIPSW NTNPLVLASF PINILNKNFR LKKRNNFRVH HNYNGASTTK AVLSSTEKST GVKAVVTVQK QVNLNLSRGL DDIGDLLGKS
101: LLLWIVAAEL DHKTGIEKPG IRAYAHRGRE VDGDTHYEAD FVIPEDFGEV GAILIENEHH KEMYVKNIVI DGFVHGKVEI TCNSWVHSKF DNPDKRIFFT
201: NKSYLPSQTP SGVSRLREEE LVTLRGDGIG KRKVFERIYD YDVYNDLGEA DSNNDDAKRP VLGGKELPYP RRCKTGRPRS KKDPLSETRS TFVYVPRDEA
301: FSEVKSVAFS GNTVYSVLHA VVPALESVVT DPNLGFPHFP AIDSLFNVGV DLPGLGDKKS GLFNVVPRLI KAISDTRKDV LLFESPQLVQ RDKFSWFRDV
401: EFARQTLAGL NPYSIRLVTE WPLRSKLDPK VYGPPESEIT KELIEKEIGN YMTVEQAVQQ KKLFILDYHD LLLPYVNKVN ELKGSMLYGS RTIFFLTPQG
501: TLKPLAIELT RPPVDDKPQW KEVYSPNDWN ATGAWLWKLA KAHVLSHDSG YHQLVSHWLR THCCTEPYII ASNRQLSAMH PIYRLLHPHF RYTMEINALA
601: REALINANGV IESSFFPGKY AIELSSIAYG AEWRFDQEAL PQNLISRGLA VEDPNEPHGL KLAIEDYPFA NDGLVLWDIL KQWVTNYVNH YYPQTNLIES
701: DKELQAWWSE IKNVGHGDKK DEPWWPELKT PNDLIGIITT IVWVTSGHHA AVNFGQYSYA GYFPNRPTVA RSKMPTEDPT AEEWEWFMNK PEEALLRCFP
801: SQIQATKVMA ILDVLSNHSP DEEYIGEKIE PYWAEDPVIN AAFEVFSGKL KELEGIIDAR NNDSKLSNRN GAGVMPYELL KPYSEPGVTG KGVPYSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.