Factsheet for PGSC0003DMT400060836

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020118
PGSC0003DMT400020464
PGSC0003DMT400029102
PGSC0003DMT400081909

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	PGSC0003DMT400020118	AT3G45140.1	11117257
AT5G18110.1	PGSC0003DMT400081909	AT3G45140.1	11117257
AT5G18110.1	PGSC0003DMT400020464	AT5G57870.1	21798944
AT5G18110.1	PGSC0003DMT400029102	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080660.1.1	Tomato	cytosol, nucleus	97.76	97.76
VIT_08s0007g07290.t01	Wine grape	cytosol	83.41	82.67
KRH70165	Soybean	cytosol	79.82	76.72
KRH08499	Soybean	cytosol	79.82	75.74
GSMUA_Achr4P11110_001	Banana	cytosol	76.23	75.22
Bra006439.1-P	Field mustard	cytosol	73.09	74.77
GSMUA_Achr3P29580_001	Banana	cytosol	75.34	74.34
CDX70795	Canola	cytosol	72.65	74.31
CDX78777	Canola	cytosol	72.2	73.85
CDY38487	Canola	cytosol	69.06	71.96
Os03t0262400-01	Rice	cytosol	73.09	71.81
AT5G18110.1	Thale cress	cytosol	70.85	71.49
EER92511	Sorghum	cytosol	73.09	71.18
Zm00001d028515_P001	Maize	cytosol	72.65	70.74
HORVU4Hr1G061500.4	Barley	cytosol	73.09	70.26
TraesCS4A01G087900.1	Wheat	cytosol	73.09	70.26
TraesCS4D01G216800.1	Wheat	cytosol	72.65	69.83
CDY53257	Canola	cytosol	69.96	69.64
CDY49143	Canola	cytosol	69.96	69.64
CDY45630	Canola	cytosol	69.96	69.64
Bra023664.1-P	Field mustard	cytosol	69.96	69.64
TraesCS4B01G216300.1	Wheat	cytosol	72.2	69.4
CDY02645	Canola	cytosol	69.51	69.2
Bra002134.1-P	Field mustard	cytosol	55.16	65.08
HORVU2Hr1G094490.1	Barley	plastid	38.12	51.83
PGSC0003DMT400044186	Potato	cytosol	25.56	28.5
PGSC0003DMT400034911	Potato	cytosol	26.91	25.97

Protein Annotations

EntrezGene:102601507	MapMan:17.4.2.6	Gene3D:3.30.760.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023398	UniProt:M1C6I4	PFAM:PF01652	EnsemblPlantsGene:PGSC0003DMG400023664
PGSC:PGSC0003DMG400023664	EnsemblPlants:PGSC0003DMT400060836	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF18	SUPFAM:SSF55418
InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI000294E999	RefSeq:XP_006351360.1	:

Description

Eukaryotic translation initiation factor 4e type [Source:PGSC_GENE;Acc:PGSC0003DMG400023664]

Coordinates

chr10:+:57309341..57313311

Molecular Weight (calculated)

25587.4 Da

IEP (calculated)

8.317

GRAVY (calculated)

-0.474

Length

223 amino acids

Sequence
(BLAST)

001: MEVTPEKKEL DNKNTNNTQS LIIDPSIAAE DRERIAVDLK AGLHPLKNKF VFWYTRRTPG VRTQTSYEDN IKKIVDFSTV EGFWVCYCHL ARPSALPSPT
101: DLHLFKEGIR PLWEDSANCH GGKWIIRFKK AVSGRFWEDL VLALVGDQLD YGDNICGAVL SIRFNEDILS VWNRNASDQQ AVMALRDSIK RHLKLPGGYV
201: MEYKAHDASL RDNSSYRNTW IRS

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.