Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G216800.1 | Wheat | cytosol | 99.57 | 99.57 |
| TraesCS4A01G087900.1 | Wheat | cytosol | 98.71 | 98.71 |
| HORVU4Hr1G061500.4 | Barley | cytosol | 98.71 | 98.71 |
| Os03t0262400-01 | Rice | cytosol | 81.47 | 83.26 |
| EER92511 | Sorghum | cytosol | 81.03 | 82.1 |
| Zm00001d028515_P001 | Maize | cytosol | 80.17 | 81.22 |
| GSMUA_Achr4P11110_001 | Banana | cytosol | 74.57 | 76.55 |
| VIT_08s0007g07290.t01 | Wine grape | cytosol | 72.41 | 74.67 |
| GSMUA_Achr3P29580_001 | Banana | cytosol | 72.41 | 74.34 |
| KRH70165 | Soybean | cytosol | 73.71 | 73.71 |
| KRH08499 | Soybean | cytosol | 73.71 | 72.77 |
| PGSC0003DMT400060836 | Potato | cytosol | 69.4 | 72.2 |
| Bra006439.1-P | Field mustard | cytosol | 67.67 | 72.02 |
| Solyc10g080660.1.1 | Tomato | cytosol, nucleus | 68.97 | 71.75 |
| CDX70795 | Canola | cytosol | 67.24 | 71.56 |
| CDX78777 | Canola | cytosol | 66.81 | 71.1 |
| CDY38487 | Canola | cytosol | 65.09 | 70.56 |
| AT5G18110.1 | Thale cress | cytosol | 66.38 | 69.68 |
| CDY02645 | Canola | cytosol | 64.66 | 66.96 |
| Bra023664.1-P | Field mustard | cytosol | 64.66 | 66.96 |
| CDY45630 | Canola | cytosol | 64.22 | 66.52 |
| CDY53257 | Canola | cytosol | 64.22 | 66.52 |
| CDY49143 | Canola | cytosol | 64.22 | 66.52 |
| Bra002134.1-P | Field mustard | cytosol | 49.57 | 60.85 |
| HORVU2Hr1G094490.1 | Barley | plastid | 40.95 | 57.93 |
| TraesCS1B01G167100.1 | Wheat | cytosol | 27.59 | 30.62 |
| TraesCS3B01G591300.1 | Wheat | cytosol | 25.0 | 26.98 |
Protein Annotations
| MapMan:17.4.2.6 | Gene3D:3.30.760.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR023398 | PFAM:PF01652 | ScanProsite:PS00813 |
| PANTHER:PTHR11960 | PANTHER:PTHR11960:SF18 | SUPFAM:SSF55418 | InterPro:TIF_eIF4e-like | InterPro:TIF_eIF_4E | InterPro:TIF_eIF_4E_CS |
| EnsemblPlantsGene:TraesCS4B01G216300 | EnsemblPlants:TraesCS4B01G216300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:+:456347034..456352056
Molecular Weight (calculated)
26971.7 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.755
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPAVERKVP EQEEQLQPSH ARAEDAPPAA VEEEDEAEAE ESERRNRELK AGLHPLRRKL VLWYTRRTPG TRSQSYEDNI KKIVDFSTVE SFWVCYCHLA
101: RPSSLPSPTD LHLFKEGVRP LWEDPANRNG GKWIIRFKKA VSGRFWEDLV LVLAGDQLDY SDDVCGIVLS CRFNEDILSV WNRNASDHQA VMTLRDSIKR
201: HLKLPHTYLM EYKPHDASLR DNSSYRNTWL RG
101: RPSSLPSPTD LHLFKEGVRP LWEDPANRNG GKWIIRFKKA VSGRFWEDLV LVLAGDQLDY SDDVCGIVLS CRFNEDILSV WNRNASDHQA VMTLRDSIKR
201: HLKLPHTYLM EYKPHDASLR DNSSYRNTWL RG
001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
Arabidopsis Description
NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.