Factsheet for TraesCS7B01G145200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G244800.1	Wheat	plastid	97.95	97.53
TraesCS7A01G246200.1	Wheat	plastid	97.09	96.78
HORVU7Hr1G050680.1	Barley	peroxisome	64.44	87.43
OQU80925	Sorghum	cytosol	73.81	79.19
Os08t0509100-01	Rice	nucleus	75.11	74.07
Os08t0508800-01	Rice	nucleus, plasma membrane	73.49	73.81
Zm00001d031449_P001	Maize	mitochondrion	75.86	73.64
VIT_13s0064g01500.t01	Wine grape	cytosol	18.32	68.0
GSMUA_Achr9P12470_001	Banana	plastid	55.6	61.21
CDY61034	Canola	cytosol	29.09	60.4
Solyc01g009680.2.1	Tomato	plastid	28.77	60.27
VIT_13s0064g01490.t01	Wine grape	cytosol	25.75	59.9
CDY72550	Canola	cytosol	20.69	59.81
VIT_06s0004g01500.t01	Wine grape	cytosol	50.43	59.17
CDY07409	Canola	cytosol	24.57	58.91
VIT_06s0004g01480.t01	Wine grape	cytosol	49.25	57.63
PGSC0003DMT400020118	Potato	cytosol	42.46	56.85
VIT_13s0064g01480.t01	Wine grape	plastid	55.06	56.59
VIT_06s0004g01460.t01	Wine grape	plastid	35.78	55.52
KRG89889	Soybean	cytosol, plastid	50.43	54.42
VIT_06s0004g01470.t01	Wine grape	cytosol	52.91	54.37
KRG89883	Soybean	cytosol, plastid	50.11	54.13
KRH29668	Soybean	nucleus	52.8	54.08
KRH24671	Soybean	cytosol, plastid	53.12	53.94
KRH29669	Soybean	plastid	52.26	53.83
CDY61881	Canola	cytosol	20.58	53.8
PGSC0003DMT400081909	Potato	plastid	51.94	53.62
VIT_06s0004g01510.t01	Wine grape	plastid	52.05	53.61
Solyc01g006540.2.1	Tomato	plastid	51.4	53.24
CDY70843	Canola	cytosol	7.22	53.17
Solyc01g006560.2.1	Tomato	plastid	51.62	53.1
KRG89888	Soybean	nucleus	51.08	52.49
TraesCS6B01G193400.1	Wheat	plastid	50.54	52.05
KRH17965	Soybean	plastid	51.19	51.74
KRH18682	Soybean	cytosol, mitochondrion	50.65	51.59
Solyc12g011040.1.1	Tomato	nucleus, plastid	49.25	51.23
TraesCS6B01G014400.1	Wheat	cytosol	32.97	50.92
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	46.77	50.52
AT3G45140.1	Thale cress	plastid	48.06	49.78
CDX91565	Canola	plastid	48.06	49.56
CDY04196	Canola	plastid	47.31	49.38
Bra004059.1-P	Field mustard	plastid	45.69	48.96
CDX67920	Canola	plastid	47.41	48.67
CDX79416	Canola	plastid	47.41	48.67
CDY16339	Canola	plastid	39.87	48.62
Bra004057.1-P	Field mustard	cytosol	46.66	48.6
Bra003526.1-P	Field mustard	plastid	47.31	48.56
Bra004060.1-P	Field mustard	plastid	46.66	48.16
CDY61036	Canola	plastid	46.12	48.14
TraesCS5B01G006500.1	Wheat	plastid	47.84	47.84
Bra022535.1-P	Field mustard	plastid	41.81	47.84
TraesCS5B01G033000.1	Wheat	plastid	46.34	45.26
TraesCS2B01G333600.1	Wheat	plastid	42.46	42.97
CDY61880	Canola	plastid	25.11	42.29
TraesCS4B01G295200.1	Wheat	plastid	41.59	41.82
Bra004058.1-P	Field mustard	plastid	47.09	41.3
TraesCS1B01G226400.1	Wheat	cytosol	36.85	40.52
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	37.39	40.3
CDY07407	Canola	cytosol, plastid	47.31	40.02
TraesCS5B01G382600.1	Wheat	cytosol	37.07	39.95
TraesCS4B01G037700.3	Wheat	cytosol, golgi	36.96	39.84
TraesCS5B01G382400.1	Wheat	cytosol, golgi	36.53	39.6
TraesCS4B01G037800.1	Wheat	cytosol	37.18	39.29
TraesCS5B01G382300.1	Wheat	cytosol, unclear	36.53	39.24
CDY07408	Canola	plastid	19.29	39.08
TraesCS3B01G602500.1	Wheat	cytosol	36.96	38.93
CDY70245	Canola	plastid	18.97	38.43
TraesCS3B01G605700.1	Wheat	cytosol	36.42	38.19
CDY70606	Canola	plastid	16.16	37.97
TraesCS6B01G160400.1	Wheat	mitochondrion	34.7	36.88
TraesCS6B01G395700.1	Wheat	cytosol	31.79	36.33
CDY61882	Canola	plastid	14.66	35.14
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	32.44	32.47

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF66	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS7B01G145200
EnsemblPlants:TraesCS7B01G145200.1	TIGR:cd01751	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7B:-:188394152..188399258

Molecular Weight (calculated)

102204.0 Da

IEP (calculated)

7.427

GRAVY (calculated)

-0.323

Length

928 amino acids

Sequence
(BLAST)

001: MSLPQLKPSS LQSHHHTIAS RRILPSPSST CSSSLPSSSL SAGRRARALR GGGQLIVRCA SVGPSEVVPA SSSIGGSGAS SDMAGKGGAS VRVKAVATVK
101: VTVGGFLDGL RPSRTMDDVK DLIGRSMELE LVSAELDAKT GKEKQTIKSY AHKVADNDLH IVTYEADFNV PAGFGPVGAV LVANEHGTEM FLEDVKVVTA
201: GGNSAPDVIR CDSWLPPKSG DAKHVFFANK PYLPSQTPPG LQGYRKNDLA KKRGDGTGQR KATDRVYDYD VYNDLGSGEE LGAAGARPVL GGNKQFPYPR
301: RCRTGRPRST KDPQSETRSG DVYVPRDEAF SEEKNVQFSV KTLQSVLHAA VPAVQSTLID PNQGFPSFFV IDKLFEDGVE LPRAEELGFL RAAVPRLLEF
401: LRDGPGDKVL LFDAPANVQK DKFAWLRDEE FARETLAGIN PYAIELVKEF PLKSKLDPAV YGPAESAITA ELLEAQMGHT MTVPEAVKSK RLFMLDFHDL
501: FLPYVHKIRA LQRTTMYGSR TILFLTDDGT LRLLAIELTR PPSPTMPQWR QVFTSSTDTT KSWLWRMAKS HVRAHDAGHH ELVTHWLRTH CAVEPYILAA
601: NRQLSEMHPV YQLLRPHFRY TMRINALARS ALINGGGIIE LTFSPQRYAM ELSSVAYDKL WRFDMEALPA DLVRRGMAEE DPTAEHGLKL AIKDYPFAND
701: GLLIWDAIKG WVQAYVSRYY PTAASVTGDA ELQAFWTEVR TEGHGDKKDA PWWPKLDTPE SLAHTLTTII WVAAAHHAAV NFGQYDFGGY FPNRPSIART
801: NMPVEEPVDA VAFEKFLDNP DQALRECFPS QVQATLVMAV LDVLSSHSPD EEYLGGMETA PWGDDTTVRA AYLRFNEQLK AVEGIIDGRN KNRKLKNRCG
901: AGIVPYQLMK PFSQPGVTGK GIPNSTSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.