Factsheet for TraesCS1B01G226400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G212900.1	Wheat	cytosol	98.1	98.1
TraesCS1D01G215800.2	Wheat	cytosol	98.22	97.99
HORVU1Hr1G054390.4	Barley	cytosol	96.33	96.33
Os05t0304600-01	Rice	plastid	79.15	78.87
KXG24148	Sorghum	cytosol	79.15	77.95
Zm00001d041204_P001	Maize	cytosol	77.37	76.82
KXG23911	Sorghum	cytosol, plastid	45.73	70.83
GSMUA_Achr2P05850_001	Banana	cytosol	62.56	64.16
PGSC0003DMT400074322	Potato	cytosol	29.86	57.01
Solyc09g055900.2.1	Tomato	cytosol	30.69	56.06
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	39.81	52.66
VIT_07s0289g00010.t01	Wine grape	cytosol	28.44	50.31
KRH07345	Soybean	cytosol, plastid	50.0	49.01
KRH66214	Soybean	cytosol	50.24	48.96
TraesCS4B01G037800.1	Wheat	cytosol	47.87	46.01
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	45.97	45.06
TraesCS5B01G382300.1	Wheat	cytosol, unclear	45.97	44.91
TraesCS4B01G037700.3	Wheat	cytosol, golgi	45.5	44.6
TraesCS3B01G602500.1	Wheat	cytosol	46.33	44.38
TraesCS5B01G382400.1	Wheat	cytosol, golgi	44.43	43.81
TraesCS3B01G605700.1	Wheat	cytosol	45.85	43.73
TraesCS5B01G382600.1	Wheat	cytosol	44.55	43.67
TraesCS6B01G160400.1	Wheat	mitochondrion	45.02	43.53
TraesCS6B01G395700.1	Wheat	cytosol	38.51	40.02
TraesCS6B01G014400.1	Wheat	cytosol	28.2	39.6
TraesCS6B01G193400.1	Wheat	plastid	40.05	37.51
TraesCS2B01G333600.1	Wheat	plastid	40.76	37.51
TraesCS4B01G295200.1	Wheat	plastid	41.0	37.49
TraesCS7B01G145200.1	Wheat	plastid	40.52	36.85
TraesCS5B01G006500.1	Wheat	plastid	39.45	35.88
Solyc09g055890.2.1	Tomato	cytosol	15.76	35.85
PGSC0003DMT400074324	Potato	cytosol	14.69	35.84
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	37.91	34.52
TraesCS5B01G033000.1	Wheat	plastid	37.68	33.47

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF59	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS1B01G226400	EnsemblPlants:TraesCS1B01G226400.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:407291009..407294285

Molecular Weight (calculated)

95027.2 Da

IEP (calculated)

7.982

GRAVY (calculated)

-0.451

Length

844 amino acids

Sequence
(BLAST)

001: MQMPFCPKLW DRSPVPPANA IAVNGTVVVA NTFGLSAPGK STTLRLFSGT QIDHETGKGK LSPEAPLRGG KKSKHGKTST TTYHVTFLVD ADFGTPGAVS
101: VRNGNRADQF FLRHVRLELA EDRSIHFECN SWVYPYKKTA SDRLFFINSS YLPSKTPEAL VLLRDEELRS LRGDGKGERK DWERIYDYDR YNDLGNPDNP
201: EHVRPVVGGT RTHPYPRRCR TGRAISNTDG VTETRKHMIN LDFYIPPDER FSPGKLAEVL KLGVQAVTHF VIPEARTLIH GNDFKSMEQL RKDLYSRPVQ
301: PAVDGEVMEK LKSSVPSHKT YKQVAKAVKE EHPAKFPIPQ VIQQDPEAWR SDEEFAREML AGLNPVAIKR LQTFPPVSSG GKKSSITAEH IKSQLGDVTI
401: EMAMHQKRLY ILDHHDYLMP YLRRINTLGV CIYASRTLLF LKADGTLKPV VIELSLPSDG EGDTELSRVF LPASHGTEGH LWQLAKAHVS VNDSGYHQLI
501: SHWLFTHAAV EPFIIATRRQ LSAMHPIHKL LEPHFKDTMQ INTLARSILL NAGGILERTM YPGKYAVEMS SAIYGDWRFT EQSLPNDLLK RGVASSSNEP
601: GGLTLHIEDY PYAVDGLEVW HAIDGWVRSY CAHFYHGDKE VDGDAELQAW WHDVRTVGHG DRQGDQACWL ALDTVDHLAQ TLSTLIWIAS ALHAAVNFGQ
701: YAYAGFPPNR PTRCRRFVPL PGSPEMTQLE ADPEKFFLEM VPDRFTATLG LALIEVLSNH TSDEVYLGQR ATSTWTDDGQ LLRLLDRFRE DLRRVEKRVE
801: ERNKDQRLKN RRGPAKVPYT LLFPDVAGQE KGLTGKGIPN SVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.