Factsheet for TraesCS6B01G014400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G047210.1	Barley	cytosol	32.78	90.78
Os12t0559934-00	Rice	cytosol	25.12	77.44
TraesCS6D01G010100.1	Wheat	plastid	91.18	58.36
Solyc01g009680.2.1	Tomato	plastid	41.43	56.21
CDY61034	Canola	cytosol	41.76	56.15
CDY07409	Canola	cytosol	34.11	52.97
Os12t0560200-00	Rice	cytosol	8.65	52.53
CDY72550	Canola	cytosol	27.79	52.02
VIT_13s0064g01500.t01	Wine grape	cytosol	21.63	52.0
VIT_06s0004g01460.t01	Wine grape	plastid	49.08	49.33
CDY61881	Canola	cytosol	27.45	46.48
TraesCS5B01G006500.1	Wheat	plastid	71.21	46.12
TraesCS5B01G033000.1	Wheat	plastid	67.55	42.74
VIT_13s0064g01490.t01	Wine grape	cytosol	27.45	41.35
Os12t0559200-01	Rice	plastid	63.23	41.21
PGSC0003DMT400020118	Potato	cytosol	47.42	41.13
VIT_06s0004g01500.t01	Wine grape	cytosol	53.24	40.46
VIT_06s0004g01480.t01	Wine grape	cytosol	52.58	39.85
CDY70843	Canola	cytosol	8.15	38.89
VIT_13s0064g01480.t01	Wine grape	plastid	53.74	35.77
TraesCS6B01G193400.1	Wheat	plastid	53.08	35.41
KRH29668	Soybean	nucleus	52.91	35.1
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	50.08	35.04
KRG89883	Soybean	cytosol, plastid	49.92	34.92
VIT_06s0004g01510.t01	Wine grape	plastid	52.25	34.85
KRH24671	Soybean	cytosol, plastid	52.91	34.79
VIT_06s0004g01470.t01	Wine grape	cytosol	52.25	34.77
Solyc01g006560.2.1	Tomato	plastid	51.91	34.59
KRH29669	Soybean	plastid	51.08	34.07
Solyc01g006540.2.1	Tomato	plastid	50.75	34.04
PGSC0003DMT400081909	Potato	plastid	50.92	34.04
KRG89889	Soybean	cytosol, plastid	48.09	33.6
CDX91565	Canola	plastid	49.92	33.33
KRH17965	Soybean	plastid	50.92	33.33
CDX67920	Canola	plastid	50.08	33.3
Bra003526.1-P	Field mustard	plastid	49.92	33.19
CDX79416	Canola	plastid	49.92	33.19
CDY04196	Canola	plastid	48.92	33.07
TraesCS7B01G145200.1	Wheat	plastid	50.92	32.97
AT3G45140.1	Thale cress	plastid	49.08	32.92
KRH18682	Soybean	cytosol, mitochondrion	49.58	32.71
KRG89888	Soybean	nucleus	48.92	32.56
Bra004060.1-P	Field mustard	plastid	48.09	32.15
Bra004057.1-P	Field mustard	cytosol	47.59	32.1
Solyc12g011040.1.1	Tomato	nucleus, plastid	47.59	32.06
CDY61036	Canola	plastid	47.25	31.95
Bra004059.1-P	Field mustard	plastid	45.59	31.64
CDY16339	Canola	plastid	39.77	31.41
TraesCS5B01G382400.1	Wheat	cytosol, golgi	41.6	29.21
Bra022535.1-P	Field mustard	plastid	39.1	28.98
TraesCS5B01G382600.1	Wheat	cytosol	41.43	28.92
TraesCS5B01G382300.1	Wheat	cytosol, unclear	40.77	28.36
TraesCS1B01G226400.1	Wheat	cytosol	39.6	28.2
TraesCS4B01G295200.1	Wheat	plastid	43.09	28.06
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	39.6	27.64
TraesCS2B01G333600.1	Wheat	plastid	41.43	27.15
TraesCS4B01G037700.3	Wheat	cytosol, golgi	38.77	27.06
Bra004058.1-P	Field mustard	plastid	47.59	27.03
TraesCS4B01G037800.1	Wheat	cytosol	39.27	26.88
TraesCS6B01G160400.1	Wheat	mitochondrion	38.94	26.8
TraesCS3B01G605700.1	Wheat	cytosol	39.1	26.55
CDY07407	Canola	cytosol, plastid	48.09	26.34
TraesCS3B01G602500.1	Wheat	cytosol	38.6	26.33
TraesCS6B01G395700.1	Wheat	cytosol	31.28	23.15
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	35.44	22.98
CDY61880	Canola	plastid	17.64	19.24
CDY70245	Canola	plastid	8.15	10.7
CDY07408	Canola	plastid	7.99	10.48
CDY70606	Canola	plastid	4.49	6.84
CDY61882	Canola	plastid	1.83	2.84

Protein Annotations

Gene3D:1.20.245.10	Gene3D:3.10.450.60	MapMan:50.1.12	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114
InterPro:IPR013819	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
PFAM:PF00305	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00711	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF89	SUPFAM:SSF48484	EnsemblPlantsGene:TraesCS6B01G014400	EnsemblPlants:TraesCS6B01G014400.1	:	:

Description

No Description!

Coordinates

chr6B:-:8786252..8790077

Molecular Weight (calculated)

68441.1 Da

IEP (calculated)

5.410

GRAVY (calculated)

-0.274

Length

601 amino acids

Sequence
(BLAST)

001: MSVLHGICRI MKSSKHSSQS FPNLVAINAM YDDEFRNQPV QPDCGKFKCI AEFLEKEAVL LFEKEGAEFL EGIRGVFKFE IIRTNVGDKF AWFRDEEFAC
101: ETRAGVNPLS IQLVRELPLV SKLDEKIYGP ADSLITKELI QEQINGVMTA EEAMAKKKLF MLDYHDLYLP FVNKVRQLEG TTLYGARALF FLAGDGTLRP
201: IAIELTRPKS ANMPEWREVF MPASGHEASI TGSWQWQLAK AHVLCLDTGY HQLVSHWLRT HCCVEPYIIA ANRQLSQMHP IYRLLHPSFR FTMEINAQAR
301: KLLINADGII ESTFSPGKYS MEISSAAYAE QWRFDKEALP EDLIRRGMAV RGEDGKLELA IEDYPYANDG LLVWDAIKQW ASDYVAYYYP CAADITDDVE
401: LQAWWKEVRT KGHADKQDEL WWPHLDCNES LVQTLSTIMW VASAHHAAVN FSQYPFGGYV PNRPSIARIN MPSDMGPDGM RVFMEAPDKV LLDAFPSQYQ
501: SAMVMAILDL LSSHSSGEEY LAMYQEPAWQ QNGKINKAFE DEFRERMLRI GVQVNKWNMD PERKNRYGPG MVPYVQLRPS DGDPMGAKTV MGMGVPTSIS
601: I

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.