CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 5
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH08499
KRH33614
KRH70165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	KRH08499	AT5G18110.1	11117257
AT3G45140.1	KRH70165	AT5G18110.1	11117257
AT3G45140.1	KRG90357	AT5G35620.1	11117257
AT3G45140.1	KRH33614	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89889	Soybean	cytosol, plastid	78.58	78.49
KRG89888	Soybean	nucleus	75.44	71.76
Solyc01g009680.2.1	Tomato	plastid	36.44	70.65
KRH17965	Soybean	plastid	75.44	70.59
KRH18682	Soybean	cytosol, mitochondrion	73.46	69.26
PGSC0003DMT400020118	Potato	cytosol	52.04	64.5
Os12t0559934-00	Rice	cytosol	14.55	64.1
CDY72550	Canola	cytosol	23.86	63.86
VIT_06s0004g01500.t01	Wine grape	cytosol	58.56	63.59
VIT_06s0004g01480.t01	Wine grape	cytosol	57.74	62.55
CDY61034	Canola	cytosol	32.36	62.19
CDY07409	Canola	cytosol	27.36	60.72
VIT_06s0004g01460.t01	Wine grape	plastid	42.03	60.37
CDY70843	Canola	cytosol	8.73	59.52
HORVU3Hr1G047210.1	Barley	cytosol	15.02	59.45
KRH29668	Soybean	nucleus	61.82	58.61
PGSC0003DMT400081909	Potato	plastid	61.12	58.4
KRH29669	Soybean	plastid	60.88	58.05
KRH24671	Soybean	cytosol, plastid	61.7	57.99
Solyc01g006540.2.1	Tomato	plastid	60.3	57.81
Solyc01g006560.2.1	Tomato	plastid	60.54	57.65
VIT_06s0004g01470.t01	Wine grape	cytosol	60.42	57.48
VIT_06s0004g01510.t01	Wine grape	plastid	60.07	57.27
GSMUA_Achr9P12470_001	Banana	plastid	54.95	55.99
Solyc12g011040.1.1	Tomato	nucleus, plastid	58.09	55.94
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	54.6	54.6
CDY61881	Canola	cytosol	22.47	54.37
OQU80925	Sorghum	cytosol	54.37	53.99
GSMUA_Achr3P11780_001	Banana	plastid	52.97	53.78
HORVU7Hr1G050680.1	Barley	peroxisome	41.79	52.49
TraesCS7D01G029400.1	Wheat	cytosol	16.18	52.45
AT3G45140.1	Thale cress	plastid	54.02	51.79
CDY04196	Canola	plastid	53.32	51.52
CDX67920	Canola	plastid	54.13	51.44
CDX79416	Canola	plastid	54.13	51.44
Bra003526.1-P	Field mustard	plastid	54.02	51.33
Bra004057.1-P	Field mustard	cytosol	52.97	51.07
CDX91565	Canola	plastid	53.2	50.78
Zm00001d053675_P001	Maize	plastid	53.2	50.5
Os08t0508800-01	Rice	nucleus, plasma membrane	54.25	50.43
TraesCS4D01G347300.1	Wheat	cytosol	51.92	50.4
Bra004059.1-P	Field mustard	plastid	50.76	50.35
Bra004060.1-P	Field mustard	plastid	52.62	50.28
CDY61036	Canola	plastid	51.92	50.17
TraesCS7B01G145200.1	Wheat	plastid	54.13	50.11
Bra022535.1-P	Field mustard	plastid	47.26	50.06
TraesCS7D01G244800.1	Wheat	plastid	54.25	50.0
TraesCS6B01G014400.1	Wheat	cytosol	34.92	49.92
TraesCS7A01G034900.1	Wheat	mitochondrion	17.0	49.83
TraesCS7A01G246200.1	Wheat	plastid	53.9	49.73
KXG29701	Sorghum	plastid	53.09	49.73
CDY16339	Canola	plastid	44.0	49.67
Os08t0509100-01	Rice	nucleus	54.37	49.63
HORVU6Hr1G033600.1	Barley	plastid	51.57	49.44
TraesCS6B01G193400.1	Wheat	plastid	51.57	49.17
TraesCS6D01G154600.1	Wheat	plastid	51.46	49.06
TraesCS6A01G166000.1	Wheat	golgi	51.34	48.95
Zm00001d015852_P004	Maize	plastid	51.8	48.85
Zm00001d031449_P001	Maize	mitochondrion	54.25	48.74
KRH35534	Soybean	cytosol	25.38	48.66
Os02t0194700-01	Rice	plasma membrane	52.27	48.49
TraesCS5B01G006500.1	Wheat	plastid	50.41	46.66
TraesCS5D01G013400.1	Wheat	plastid	50.29	46.55
TraesCS5A01G007900.1	Wheat	plastid	50.06	46.34
HORVU5Hr1G001180.1	Barley	plastid	49.71	45.86
HORVU7Hr1G006320.4	Barley	plastid	49.01	45.42
TraesCS6D01G010100.1	Wheat	plastid	49.59	45.37
Os12t0559200-01	Rice	plastid	48.08	44.79
Os12t0560200-00	Rice	cytosol	5.12	44.44
HORVU6Hr1G000510.1	Barley	plastid	47.73	43.99
CDY61880	Canola	plastid	28.17	43.92
KRH06197	Soybean	nucleus	46.57	43.38
KRH42646	Soybean	plastid	46.45	43.32
KRH16725	Soybean	cytosol	11.64	43.29
TraesCS5D01G041100.1	Wheat	plastid	47.61	43.28
KRH47615	Soybean	nucleus	46.68	43.26
KRH62403	Soybean	cytosol, endoplasmic reticulum	11.29	42.73
KRH33939	Soybean	cytosol, endoplasmic reticulum	42.96	42.66
KRH57987	Soybean	cytosol	12.81	42.64
KRH10882	Soybean	cytosol	21.54	42.63
KRH47525	Soybean	endoplasmic reticulum	43.07	42.63
KRH68548	Soybean	cytosol	42.49	42.54
TraesCS5B01G033000.1	Wheat	plastid	47.03	42.53
KRH44094	Soybean	endoplasmic reticulum	42.84	42.45
KRH44093	Soybean	endoplasmic reticulum	41.79	42.44
KRH62399	Soybean	cytosol, endoplasmic reticulum	11.64	42.37
KRH23268	Soybean	endoplasmic reticulum	41.91	42.2
KRH47069	Soybean	endoplasmic reticulum	22.35	42.2
KRH10051	Soybean	endoplasmic reticulum, nucleus	42.03	42.17
KRH44090	Soybean	endoplasmic reticulum	42.14	42.09
KRH10053	Soybean	endoplasmic reticulum	41.79	42.09
KRH69027	Soybean	plastid	44.12	42.06
CDY07407	Canola	cytosol, plastid	53.67	42.02
KRG91271	Soybean	cytosol	41.91	41.96
KRH23266	Soybean	cytosol	40.28	41.89
KRH47522	Soybean	endoplasmic reticulum, nucleus	42.14	41.85
KRG97300	Soybean	plastid	43.77	41.82
KRH47066	Soybean	endoplasmic reticulum, nucleus	41.79	41.79
Bra004058.1-P	Field mustard	plastid	51.46	41.78
KRH10050	Soybean	endoplasmic reticulum	41.68	41.77
KRH44097	Soybean	cytosol, endoplasmic reticulum	41.91	41.47
KRH47067	Soybean	endoplasmic reticulum	41.44	41.2
KRH44095	Soybean	endoplasmic reticulum	41.44	41.11
KRH23269	Soybean	endoplasmic reticulum	39.23	41.0
KRH13357	Soybean	endoplasmic reticulum	11.53	40.91
CDY70245	Canola	plastid	21.77	40.83
KRH44092	Soybean	nucleus	40.63	40.72
KRH23265	Soybean	endoplasmic reticulum, nucleus	40.51	40.18
TraesCS5A01G032800.1	Wheat	mitochondrion	39.35	39.35
KRH21441	Soybean	cytosol	41.33	39.01
KRH50048	Soybean	cytosol	41.09	38.79
CDY70606	Canola	plastid	17.7	38.48
KRH47064	Soybean	endoplasmic reticulum	25.49	38.42
CDY07408	Canola	plastid	20.37	38.21
KRH07345	Soybean	cytosol, plastid	37.72	37.63
KRH66214	Soybean	cytosol	37.83	37.53
CDY61882	Canola	plastid	16.88	37.47
KRG88464	Soybean	cytosol	18.74	35.31
KRH30640	Soybean	cytosol	7.33	33.69

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100809699	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02012304	EnsemblPlantsGene:GLYMA_20G053700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1NE46	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRG89883
ProteinID:KRG89883	ProteinID:KRG89883.1	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000233DE62	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:12340997..12348207

Molecular Weight (calculated)

97258.6 Da

IEP (calculated)

5.880

GRAVY (calculated)

-0.385

Length

859 amino acids

Sequence
(BLAST)

001: MWCVPQCMKA GMATSSGNTN TKSQNVNVKA VVTIEQSDGG LVPNLINSAV DGIKELAGKT LVLELVSDEL DPKTNIEKKT PKSSVQNIGK KEDEIRYEAQ
101: FELSTDFGSV GAVTIENEQQ EEVFLKSIVL HGFPDIGHVH FTCNSWIQPK HDGAMKRVFF TDKSYLPSQT PRGLQRLREE ELVLLRGNGE GECQSSDRIY
201: DYDVYNDIGD PDTNIDLKRP VLGGTKQNPY PRRCRTGRKH SDADPLSEKK SSGFYVPRDE AFASIKQTQF TSSAVSLGLN AIFESVDTIL TDPNLGFFSF
301: EDIDTLFKEG LHLPPLKANG LSLLQRVIPK LIKAANDTQN ILRFDAPETF KRDKFFWFSD VEFARETLAG VNPYSIQLVK EWPLTSKLDP QIYGPQESTI
401: TREVIEPQII TYGTIEEALK EKKLFMLDYH DLFLPYVSKV RKIKGTTLYG SRTLFFLTDQ GILKPLAIEL TRPPMDGNPQ WKQVFQPSCD STNLWLWRLA
501: KAHVLAHDSG YHELISHWLR THCVVEPFVI ATHRQLSSMH PIYRLLHPHL RYTMQINSLA REALISANGV IEISFLTNKY SMELSSVAYD QLWQFDSQAL
601: PNDLISRGMA VADPNAPHGL KLTIEDYPFA NDGLLIWDAI KQWVTDYVNH YYPTPSIIES DQELQAWWKE IKTVGHGDKS EEPWWPNLNT SKDLIDIITT
701: IAWVASGHHA AVNFSQYAYG GYFPNRPTIA RNKMPTEDPS EEEWGNFLNK PEQTLLECFP SQIQATLVMV VLNLLSDHSL DEQYIGKYME PSWAENPTIK
801: VAFERFNRRL KEIEGIIDSR NGNSNLKNRH GAGIMPYELL KPFSGPGVTG KGVPYSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.