Factsheet for HORVU6Hr1G000510.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G039260.2
HORVU2Hr1G094490.1
HORVU4Hr1G061500.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	HORVU2Hr1G094490.1	AT5G18110.1	11117257
AT3G45140.1	HORVU4Hr1G061500.4	AT5G18110.1	11117257
AT3G45140.1	HORVU1Hr1G039260.2	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0559934-00	Rice	cytosol	17.27	82.56
HORVU3Hr1G047210.1	Barley	cytosol	18.03	77.42
HORVU5Hr1G001180.1	Barley	plastid	73.18	73.25
HORVU7Hr1G006320.4	Barley	plastid	65.24	65.59
Os12t0559200-01	Rice	plastid	59.01	59.65
VIT_13s0064g01490.t01	Wine grape	cytosol	24.68	57.64
Solyc01g009680.2.1	Tomato	plastid	27.36	57.56
CDY61034	Canola	cytosol	27.47	57.27
CDY07409	Canola	cytosol	22.96	55.3
Os12t0560200-00	Rice	cytosol	5.79	54.55
VIT_13s0064g01500.t01	Wine grape	cytosol	14.38	53.6
CDY72550	Canola	cytosol	18.45	53.58
PGSC0003DMT400020118	Potato	cytosol	39.81	53.54
VIT_06s0004g01500.t01	Wine grape	cytosol	45.39	53.48
VIT_06s0004g01480.t01	Wine grape	cytosol	45.06	52.96
HORVU6Hr1G033600.1	Barley	plastid	50.64	52.68
VIT_06s0004g01460.t01	Wine grape	plastid	33.26	51.84
HORVU7Hr1G050680.1	Barley	peroxisome	36.91	50.29
VIT_13s0064g01480.t01	Wine grape	plastid	48.61	50.17
KRH29668	Soybean	nucleus	48.61	50.0
KRH24671	Soybean	cytosol, plastid	48.71	49.67
CDY61881	Canola	cytosol	18.78	49.3
VIT_06s0004g01510.t01	Wine grape	plastid	47.53	49.17
PGSC0003DMT400081909	Potato	plastid	47.42	49.17
KRH29669	Soybean	plastid	47.32	48.95
VIT_06s0004g01470.t01	Wine grape	cytosol	47.32	48.84
Solyc01g006560.2.1	Tomato	plastid	46.89	48.45
HORVU5Hr1G055110.2	Barley	mitochondrion	18.35	48.44
Solyc01g006540.2.1	Tomato	plastid	46.35	48.21
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	44.42	48.2
KRG89883	Soybean	cytosol, plastid	43.99	47.73
KRG89889	Soybean	cytosol, plastid	43.88	47.56
CDX79416	Canola	plastid	45.82	47.23
CDX67920	Canola	plastid	45.82	47.23
Bra003526.1-P	Field mustard	plastid	45.71	47.12
Solyc12g011040.1.1	Tomato	nucleus, plastid	45.06	47.09
KRH17965	Soybean	plastid	46.35	47.06
CDY04196	Canola	plastid	44.53	46.68
CDX91565	Canola	plastid	44.96	46.56
CDY16339	Canola	plastid	37.88	46.39
Bra004057.1-P	Field mustard	cytosol	44.21	46.24
KRG89888	Soybean	nucleus	44.74	46.18
AT3G45140.1	Thale cress	plastid	44.21	45.98
Bra004059.1-P	Field mustard	plastid	42.7	45.96
KRH18682	Soybean	cytosol, mitochondrion	44.53	45.55
Bra004060.1-P	Field mustard	plastid	43.88	45.49
CDY61036	Canola	plastid	43.03	45.11
Bra022535.1-P	Field mustard	plastid	37.88	43.53
CDY70843	Canola	cytosol	5.79	42.86
CDY61880	Canola	plastid	24.25	41.02
HORVU4Hr1G076570.6	Barley	cytosol, plastid	39.7	40.39
HORVU1Hr1G054390.4	Barley	cytosol	35.52	39.22
HORVU5Hr1G093770.1	Barley	cytosol	36.16	39.05
Bra004058.1-P	Field mustard	plastid	44.31	39.04
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	35.84	38.66
CDY07407	Canola	cytosol, plastid	44.53	37.83
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	19.74	37.7
HORVU5Hr1G117110.1	Barley	cytosol	35.62	37.43
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	34.55	36.67
CDY70245	Canola	plastid	17.81	36.24
CDY07408	Canola	plastid	17.49	35.59
HORVU2Hr1G115980.2	Barley	plastid	33.58	35.49
HORVU2Hr1G115960.1	Barley	plastid	33.91	34.16
CDY70606	Canola	plastid	14.06	33.16
CDY61882	Canola	plastid	13.63	32.82

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.375.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009536	GO:GO:0009987	GO:GO:0016165	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:HORVU6Hr1G000510	EnsemblPlants:HORVU6Hr1G000510.1
InterPro:IPR001024	InterPro:IPR013819	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	UniProt:M0YIV9	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI0002958751	SEG:seg	:	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:M0YIV9]

Coordinates

chrchr6H:+:1137738..1141672

Molecular Weight (calculated)

106318.0 Da

IEP (calculated)

6.585

GRAVY (calculated)

-0.518

Length

932 amino acids

Sequence
(BLAST)

001: MQTATKPLVG ARAVPLSRRA SFLVAEARRK PSTNSRRTRV GSTSTTTTTT TTLTDVNGPA LTTVAKPGHQ YDLKQTVEMK ATVSVHMKSF WWSDEKKERA
101: RDWAYDLILG SWLTLELVSS ELDPNTGQEH DVISGKLKHS RETEKDYDLY EAIFTVPASF GPIGAVRLVN YHHTEMLLGE VKIFPAGEDP TKSSAVTLFH
201: CHSWIDPSHC SPDKRTFFPV EKSYIPSQTP KGVEKLRKSE LEALRGNGCG ERKKHDRIYD YDVYNDLGKP ESKRPVLGGK EHPYPRRCRT GRPRSKTDPS
301: SEEESHKKGE MYVPRDETFT ERKEQAFLTK QLLSQLHGLC TGLKVNKDIL PSFPTLASID ALYDDDFRNQ PVQPEGGKVR LILDLLAKEL VHLVKLEGAE
401: FVEGIRRVFK FETPEIHDMD KLAWFRDEEF ARQTLAGMNP LSIQLVTELP IVSKLDELKY GPADSLITKE LIEKQINRIM TAEEAVAQKK LFMLDYHDLL
501: LPYVHRVRKL DNKTMYGSRT LFFLADDGTL RPIAIELTRP KSPHKQQWRK VFTPGSGYSG SVTGSWEWQL AKIHVLSHDT GYHQLVSHWL RTHCCVEPYV
601: IAANRQLSQM HPIYRLLHPH FRFTMEINAQ ARGMLICADG IIEKTFSPGE FSMEISSAAY DKQWRFDMEA LPEDLIRRGM AVRGEDGKLE LAIEDYPYAN
701: DGLLVWDAIK QWASDYVAHY YPCAADIVDD EELQDWWTEV RTKGHPDKQD EPWWPELDCH ESLVQVLATI MWVTSAHHAA VNFGQYPMAG YVPNHPSIAR
801: RNMPCEMGPE EMLAFKAAPE KVWLDTLPSQ LQTVMVMATL DLLSSHASDE EYMGTHQEPA WQRDGEVDKA FQVFQKKMRD IAEQVEEWNK DDSRRNRHGA
901: GVVPYVLLRP LNGNPMDAKT VMEMGIPNSI SI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.