Factsheet for Bra003526.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002134.1-P
Bra006439.1-P
Bra023664.1-P
Bra035393.1-P
Bra035531.1-P
Bra039484.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Bra002134.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra006439.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra023664.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra035393.1-P	AT5G35620.1	11117257
AT3G45140.1	Bra035531.1-P	AT5G35620.1	11117257
AT3G45140.1	Bra039484.1-P	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67920	Canola	plastid	99.67	99.67
Bra022535.1-P	Field mustard	plastid	76.33	85.08
Bra004057.1-P	Field mustard	cytosol	78.76	79.91
AT3G45140.1	Thale cress	plastid	78.1	78.79
Bra004059.1-P	Field mustard	plastid	74.67	77.94
Bra004060.1-P	Field mustard	plastid	77.43	77.86
Os12t0559934-00	Rice	cytosol	15.6	72.31
Solyc01g009680.2.1	Tomato	plastid	33.19	67.72
VIT_13s0064g01500.t01	Wine grape	cytosol	18.69	67.6
Bra004058.1-P	Field mustard	plastid	77.88	66.54
HORVU3Hr1G047210.1	Barley	cytosol	15.04	62.67
VIT_13s0064g01490.t01	Wine grape	cytosol	27.32	61.9
PGSC0003DMT400020118	Potato	cytosol	47.35	61.76
VIT_13s0064g01480.t01	Wine grape	plastid	56.75	56.81
PGSC0003DMT400081909	Potato	plastid	55.53	55.84
Solyc01g006560.2.1	Tomato	plastid	55.53	55.65
Solyc01g006540.2.1	Tomato	plastid	54.76	55.25
KRH29669	Soybean	plastid	54.87	55.05
KRG89883	Soybean	cytosol, plastid	51.33	54.02
KRH29668	Soybean	nucleus	54.09	53.97
KRH24671	Soybean	cytosol, plastid	54.2	53.61
Solyc12g011040.1.1	Tomato	nucleus, plastid	52.65	53.36
GSMUA_Achr3P11780_001	Banana	plastid	49.56	52.96
TraesCS7D01G029400.1	Wheat	cytosol	15.49	52.83
GSMUA_Achr9P12470_001	Banana	plastid	49.23	52.79
OQU80925	Sorghum	cytosol	49.56	51.79
KRG89889	Soybean	cytosol, plastid	49.0	51.51
Zm00001d053675_P001	Maize	plastid	51.55	51.49
KRH17965	Soybean	plastid	51.77	50.98
Zm00001d015852_P004	Maize	plastid	51.11	50.71
HORVU7Hr1G050680.1	Barley	peroxisome	38.27	50.58
TraesCS7A01G034900.1	Wheat	mitochondrion	16.37	50.51
KRG89888	Soybean	nucleus	50.22	50.28
HORVU6Hr1G033600.1	Barley	plastid	49.78	50.22
KXG29701	Sorghum	plastid	50.77	50.05
TraesCS6B01G014400.1	Wheat	cytosol	33.19	49.92
KRH18682	Soybean	cytosol, mitochondrion	50.0	49.62
Os02t0194700-01	Rice	plasma membrane	50.77	49.57
Os08t0508800-01	Rice	nucleus, plasma membrane	50.66	49.57
TraesCS6A01G166000.1	Wheat	golgi	49.12	49.28
TraesCS6B01G193400.1	Wheat	plastid	49.0	49.17
TraesCS4D01G347300.1	Wheat	cytosol	48.12	49.15
TraesCS6D01G154600.1	Wheat	plastid	48.89	49.06
Os08t0509100-01	Rice	nucleus	50.77	48.78
TraesCS7B01G145200.1	Wheat	plastid	48.56	47.31
TraesCS7A01G246200.1	Wheat	plastid	48.67	47.26
TraesCS7D01G244800.1	Wheat	plastid	48.67	47.21
TraesCS5D01G013400.1	Wheat	plastid	48.12	46.88
TraesCS5B01G006500.1	Wheat	plastid	48.12	46.88
TraesCS5A01G007900.1	Wheat	plastid	48.12	46.88
Zm00001d031449_P001	Maize	mitochondrion	49.56	46.86
HORVU5Hr1G001180.1	Barley	plastid	48.01	46.62
HORVU6Hr1G000510.1	Barley	plastid	47.12	45.71
Os12t0560200-00	Rice	cytosol	4.98	45.45
Os12t0559200-01	Rice	plastid	46.35	45.44
HORVU7Hr1G006320.4	Barley	plastid	46.02	44.88
TraesCS5B01G033000.1	Wheat	plastid	46.35	44.11
TraesCS5D01G041100.1	Wheat	plastid	45.91	43.92
TraesCS6D01G010100.1	Wheat	plastid	44.36	42.7
Bra021322.1-P	Field mustard	cytosol	40.38	42.59
Bra008037.1-P	Field mustard	plastid	42.92	42.22
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	42.81	42.11
Bra016602.1-P	Field mustard	cytosol	42.81	42.11
Bra004081.1-P	Field mustard	plastid	42.48	41.83
Bra033991.1-P	Field mustard	plastid	42.04	41.62
TraesCS5A01G032800.1	Wheat	mitochondrion	37.5	39.46
Bra039948.1-P	Field mustard	cytosol	38.05	38.78
Bra023829.1-P	Field mustard	cytosol	38.38	38.43

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EnsemblPlantsGene:Bra003526	EnsemblPlants:Bra003526.1	EnsemblPlants:Bra003526.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M4CH43
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000254195E	SEG:seg	:

Description

AT3G45140 (E=0.0) LOX2, ATLOX2 | LOX2 (LIPOXYGENASE 2); lipoxygenase

Coordinates

chrA07:-:13622899..13626665

Molecular Weight (calculated)

103070.0 Da

IEP (calculated)

5.602

GRAVY (calculated)

-0.500

Length

904 amino acids

Sequence
(BLAST)

001: MFCKESSSGL QTLSIAKSLS SPFHKPSPLI NPIWTGRRDK LCRPRNLGGR CKVTASQSNS EPKGNIMKEK VKKIKVKGYI QAEEGTVLEG LRWSRGLDDI
101: SDIAGRSLLV ELISAETDNR TLMEKDPVED YAQRVWFDGE SPDEKYECEF NMPEDFGTVG AIRIQNQHHR DIFIKERELE LPSGSVTFSC HSWVAPKSVD
201: PAKRIFFSSK SYIPSATPEP LKKLRKEELE TLQGNNRKKV GEFEKHERVY DYDVYNDVGD PDKNDELARP VIGGLSHPYP RRCKTGRKSS KKDPSTEKRE
301: GDFYVPRDEE FSTTKGTAFT GKAILAALPS VFTQLESILL DPKSPFPHFK SIEDLFDVGI NLPKDAGLLP MLPKLIKVLS EAQDDLLQFD PPILLNKDRF
401: SWIRDDEFAR QTLAGLNPYC IQLVTEWPLQ SKLDPAVYGD PNSLITWEIV EKEIRGVMSV DEALKNKRLF MLDYHDLLLP YVNKVRELDD TMLYASRTLF
501: FLSDDSTLRP VAIELTRPPD VNRPQWKQVF TPGYDATSCW LWKLAKTHVV AHDAGYHQLI SHWLRTHCCM EPYIIAANRQ LSAMHPIYRL LHPHFRYTME
601: IKASARQSLV NAGGIIETCF WPGKYSLELS SDVYGKLWRF DKEGLPADLI NRGLAVEDEK AEHGVRLTIP DYPFANDGLM LWDALKEWIT DYVNHYYPDA
701: GLITSDEELQ AWWSEVKNIG HGDKKDEPWW PELKTQDDLI GVATTIAWVA SGHHAAVNFG QYGYGGYFPN RPTTTRRRMP VEEPTEEELK EFYEEPEKVL
801: LKTFPSQKQA TQVMVTLDLL STHSPDEEYL GEEPEASWID EPVIFAAYER FKGRLQYLEG VIDERNVNVS LKNRAGAGVV KYELLKPISE PGCTGMGVPY
901: SVSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.