Factsheet for TraesCS7D01G244800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G145200.1	Wheat	plastid	97.53	97.95
TraesCS7A01G246200.1	Wheat	plastid	97.75	97.85
HORVU7Hr1G050680.1	Barley	peroxisome	64.27	87.57
TraesCS4D01G347300.1	Wheat	cytosol	81.12	85.42
OQU80925	Sorghum	cytosol	73.5	79.19
Os08t0509100-01	Rice	nucleus	75.11	74.39
Os08t0508800-01	Rice	nucleus, plasma membrane	73.71	74.35
Zm00001d031449_P001	Maize	mitochondrion	75.75	73.85
VIT_13s0064g01500.t01	Wine grape	cytosol	18.35	68.4
GSMUA_Achr9P12470_001	Banana	plastid	55.69	61.57
CDY61034	Canola	cytosol	28.97	60.4
CDY72550	Canola	cytosol	20.71	60.12
Solyc01g009680.2.1	Tomato	plastid	28.54	60.05
VIT_13s0064g01490.t01	Wine grape	cytosol	25.64	59.9
VIT_06s0004g01500.t01	Wine grape	cytosol	50.43	59.42
CDY07409	Canola	cytosol	24.57	59.17
VIT_06s0004g01480.t01	Wine grape	cytosol	49.25	57.88
VIT_13s0064g01480.t01	Wine grape	plastid	55.26	57.03
PGSC0003DMT400020118	Potato	cytosol	42.38	57.0
VIT_06s0004g01460.t01	Wine grape	plastid	35.84	55.85
KRG89889	Soybean	cytosol, plastid	50.32	54.53
VIT_06s0004g01470.t01	Wine grape	cytosol	52.68	54.37
KRH29668	Soybean	nucleus	52.79	54.3
KRG89883	Soybean	cytosol, plastid	50.0	54.25
CDY61881	Canola	cytosol	20.6	54.08
KRH29669	Soybean	plastid	52.25	54.05
KRH24671	Soybean	cytosol, plastid	53.0	54.05
PGSC0003DMT400081909	Potato	plastid	51.93	53.84
VIT_06s0004g01510.t01	Wine grape	plastid	51.72	53.5
Solyc01g006540.2.1	Tomato	plastid	51.39	53.46
CDY70843	Canola	cytosol	7.19	53.17
Solyc01g006560.2.1	Tomato	plastid	51.29	52.99
TraesCS6D01G154600.1	Wheat	plastid	50.75	52.5
KRG89888	Soybean	nucleus	50.86	52.49
TraesCS7D01G029400.1	Wheat	cytosol	14.91	52.45
KRH17965	Soybean	plastid	51.29	52.07
KRH18682	Soybean	cytosol, mitochondrion	50.43	51.59
Solyc12g011040.1.1	Tomato	nucleus, plastid	49.36	51.57
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	46.78	50.76
AT3G45140.1	Thale cress	plastid	48.07	50.0
CDX91565	Canola	plastid	48.07	49.78
CDY04196	Canola	plastid	47.42	49.72
Bra004059.1-P	Field mustard	plastid	45.6	49.08
Bra004057.1-P	Field mustard	cytosol	46.78	48.93
CDY16339	Canola	plastid	39.91	48.88
CDX79416	Canola	plastid	47.32	48.78
CDX67920	Canola	plastid	47.32	48.78
Bra003526.1-P	Field mustard	plastid	47.21	48.67
Bra004060.1-P	Field mustard	plastid	46.89	48.61
CDY61036	Canola	plastid	46.35	48.59
TraesCS5D01G013400.1	Wheat	plastid	47.85	48.06
Bra022535.1-P	Field mustard	plastid	41.63	47.84
TraesCS5D01G041100.1	Wheat	plastid	46.78	46.14
TraesCS6D01G010100.1	Wheat	plastid	46.24	45.9
TraesCS6D01G122000.1	Wheat	cytosol	15.24	45.81
TraesCS2D01G313400.1	Wheat	plastid	42.17	43.19
CDY61880	Canola	plastid	25.21	42.65
TraesCS4D01G294100.1	Wheat	plastid	41.95	42.41
Bra004058.1-P	Field mustard	plastid	47.21	41.59
TraesCS1D01G215800.2	Wheat	cytosol	36.91	40.66
CDY07407	Canola	cytosol, plastid	47.42	40.29
TraesCS4D01G035200.1	Wheat	cytosol	35.62	40.05
CDY07408	Canola	plastid	19.42	39.52
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	36.27	39.12
TraesCS4D01G035100.1	Wheat	cytosol	36.8	39.07
CDY70245	Canola	plastid	19.1	38.86
CDY70606	Canola	plastid	16.2	38.23
TraesCS5D01G388800.1	Wheat	cytosol	36.7	38.13
TraesCS5D01G513100.1	Wheat	cytosol	35.41	38.02
CDY61882	Canola	plastid	14.81	35.66
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	32.94	33.66
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	33.05	33.23
TraesCS6D01G121900.1	Wheat	mitochondrion	14.91	31.1

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF66	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS7D01G244800	EnsemblPlants:TraesCS7D01G244800.1
TIGR:cd01751	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:213509979..213514888

Molecular Weight (calculated)

102493.0 Da

IEP (calculated)

7.706

GRAVY (calculated)

-0.321

Length

932 amino acids

Sequence
(BLAST)

001: MSLPQLKPSS LQSHHRTIAS RRILPSSSSS TCSSSRLPSS SLSAGRPGRR CARALGGGGQ LIVRCASVGS SEVVPASSSI GGGGASSDMA GKGGASVRVK
101: AVATVKVTVG GFLDGLRPSR TMDDVNDLIG RSMELELVSA ELDAKTGKEK QTIKSYAHKV ADNDLHIVTY EADFNVPAGF GPVGAVLVAN EHGTEMFLED
201: VKVVTAGGNS DVIRCDSWLP PKSGDAKRVF FANKPYLPSQ TPPGLQGYRK NDLAKKRGDG TGQRKATDRV YDYDVYNDLG SGEELGAAGA RPVLGGNKQF
301: PYPRRCRTGR PRSTKDPQSE TRSGDVYVPR DEAFSEEKNV QFSVKTLQSV LHAAVPAVQS TLIDPNQGFP SFFVIDKLFE DGVELPRAEE LGFLRAAVPR
401: LLEFLRDGPG DKVLLFDAPA NVQKDKFAWL RDEEFARETL AGINPYAIEL VKEFPLKSKL DPAVYGPAES AITAELLEAQ MGHTMTVAEA VKSKRLFMLD
501: FHDLFLPYVH KIRALQRTTM YGSRTIMFLT DDGTLRLLAI ELTRPASATM PQWRQVFTSS TDTTKSWLWR MAKSHVRAHD AGHHELVTHW LRTHCAVEPY
601: ILAANRQLSE MHPIYQLLRP HFRYTMRINA LARSALINGG GIIELTFSPQ RYAMELSSVA YDKLWRFDME ALPADLVRRG MAEEDPTAEH GLKLAIKDYP
701: FANDGLLIWD AIKGWVQAYV SRYYPTAASV SGDAELQAFW TEVRTEGHGD KKDAPWWPKL DTPESLAHTL TTIIWVAAAH HAAVNFGQYD FGGYFPNRPS
801: IARTNMPVEE PVDAAAFEKF LDNPDQALRE CFPSQVQATL VMAVLDVLSS HSPDEEYLGG METAPWGEDT TVRAAYLRFN EQLKAVEGII DGRNKNRKLK
901: NRCGAGIVPY QLMKPFSQPG VTGKGIPNST SI

Best Arabidopsis Sequence Match ( AT3G45140.2 )
(BLAST)

001: MPEDFGPVGA IKIQNQYHRQ LFLKGVELKL PGGSITFTCE SWVAPKSVDP TKRIFFSDKS YLPSQTPEPL KKYRKEELET LQGKNREEVG EFTKFERIYD
101: YDVYNDVGDP DNDPELARPV IGGLTHPYPR RCKTGRKPCE TDPSSEQRYG GEFYVPRDEE FSTAKGTSFT GKAVLAALPS IFPQIESVLL SPQEPFPHFK
201: AIQNLFEEGI QLPKDAGLLP LLPRIIKALG EAQDDILQFD APVLINRDRF SWLRDDEFAR QTLAGLNPYS IQLVEEWPLI SKLDPAVYGD PTSLITWEIV
301: EREVKGNMTV DEALKNKRLF VLDYHDLLLP YVNKVRELNN TTLYASRTLF FLSDDSTLRP VAIELTCPPN INKPQWKQVF TPGYDATSCW LWNLAKTHAI
401: SHDAGYHQLI SHWLRTHACT EPYIIAANRQ LSAMHPIYRL LHPHFRYTME INARARQSLV NGGGIIETCF WPGKYALELS SAVYGKLWRF DQEGLPADLI
501: KRGLAEEDKT AEHGVRLTIP DYPFANDGLI LWDAIKEWVT DYVKHYYPDE ELITSDEELQ GWWSEVRNIG HGDKKDEPWW PVLKTQDDLI GVVTTIAWVT
601: SGHHAAVNFG QYGYGGYFPN RPTTTRIRMP TEDPTDEALK EFYESPEKVL LKTYPSQKQA TLVMVTLDLL STHSPDEEYI GEQQEASWAN EPVINAAFER
701: FKGKLQYLEG VIDERNVNIT LKNRAGAGVV KYELLKPTSE HGVTGMGVPY SISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.