Factsheet for TraesCS6D01G121900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G160400.1	Wheat	mitochondrion	98.88	50.63
TraesCS6A01G132500.1	Wheat	mitochondrion	98.88	50.63
TraesCS6A01G132200.1	Wheat	mitochondrion	98.88	50.63
VIT_06s0004g01580.t01	Wine grape	cytosol	34.23	45.67
KRG88464	Soybean	cytosol	44.97	44.08
KRH47064	Soybean	endoplasmic reticulum	43.62	34.21
KRH47069	Soybean	endoplasmic reticulum	34.0	33.41
PGSC0003DMT400063461	Potato	cytosol	49.44	31.84
TraesCS4D01G035200.1	Wheat	cytosol	54.59	29.43
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	55.7	28.82
TraesCS5D01G388800.1	Wheat	cytosol	55.03	27.42
PGSC0003DMT400063452	Potato	cytosol	47.87	26.78
GSMUA_Achr1P22970_001	Banana	cytosol	48.99	25.89
Solyc01g099180.2.1	Tomato	cytosol	48.77	25.53
VIT_14s0128g00780.t01	Wine grape	cytosol	48.99	25.49
Bra021322.1-P	Field mustard	cytosol	48.77	25.44
PGSC0003DMT400081370	Potato	cytosol	49.66	25.31
TraesCS5D01G513100.1	Wheat	cytosol	48.77	25.12
Solyc09g075860.2.1	Tomato	cytosol, nucleus	49.22	25.09
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	48.32	25.06
AT1G55020.1	Thale cress	cytosol	48.1	25.03
TraesCS4D01G035100.1	Wheat	cytosol	48.99	24.94
KRG91271	Soybean	cytosol	47.87	24.94
KRH68548	Soybean	cytosol	47.87	24.94
PGSC0003DMT400063446	Potato	cytosol	44.74	24.88
VIT_14s0128g00790.t01	Wine grape	cytosol	48.32	24.86
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	47.65	24.83
KRH33939	Soybean	cytosol, endoplasmic reticulum	47.87	24.74
Os11t0575600-01	Rice	mitochondrion	47.87	24.65
Solyc01g099210.2.1	Tomato	cytosol	47.43	24.57
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	47.2	24.53
PGSC0003DMT400063477	Potato	cytosol	46.98	24.53
KRH10050	Soybean	endoplasmic reticulum	46.98	24.5
PGSC0003DMT400028158	Potato	cytosol	47.2	24.48
KRH23269	Soybean	endoplasmic reticulum	44.74	24.33
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	46.76	24.27
PGSC0003DMT400054145	Potato	cytosol	46.53	24.24
KRH44093	Soybean	endoplasmic reticulum	45.64	24.11
KRH10051	Soybean	endoplasmic reticulum, nucleus	45.19	23.6
KRH47522	Soybean	endoplasmic reticulum, nucleus	45.64	23.58
PGSC0003DMT400063469	Potato	cytosol	44.3	23.49
KRH44090	Soybean	endoplasmic reticulum	44.74	23.26
Solyc01g099200.2.1	Tomato	cytosol, plastid	43.62	23.19
KRH47066	Soybean	endoplasmic reticulum, nucleus	44.07	22.93
KRH23268	Soybean	endoplasmic reticulum	43.4	22.74
KRH10053	Soybean	endoplasmic reticulum	43.18	22.63
KRH47067	Soybean	endoplasmic reticulum	43.62	22.57
KRH23266	Soybean	cytosol	41.61	22.52
KRH44094	Soybean	endoplasmic reticulum	43.62	22.49
KRH44097	Soybean	cytosol, endoplasmic reticulum	43.62	22.47
KRH23265	Soybean	endoplasmic reticulum, nucleus	43.4	22.4
KRH44095	Soybean	endoplasmic reticulum	43.4	22.4
Bra039948.1-P	Field mustard	cytosol	44.3	22.32
VIT_05s0020g03170.t01	Wine grape	cytosol	43.62	22.26
CDY38326	Canola	cytosol	44.07	22.21
KRH47525	Soybean	endoplasmic reticulum	42.95	22.12
CDY46325	Canola	cytosol	43.62	22.11
Solyc09g075870.1.1	Tomato	cytosol	42.06	22.01
AT3G22400.1	Thale cress	cytosol	43.62	22.01
Bra023829.1-P	Field mustard	cytosol	44.3	21.93
CDY64191	Canola	cytosol	43.85	21.61
KRH44092	Soybean	nucleus	37.81	19.72
TraesCS1D01G215800.2	Wheat	cytosol	35.12	18.56
Solyc01g099150.2.1	Tomato	nucleus	35.35	18.33
CDY43490	Canola	cytosol, plasma membrane	48.99	18.2
TraesCS2D01G313400.1	Wheat	plastid	35.79	17.58
TraesCS4D01G294100.1	Wheat	plastid	34.45	16.7
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	34.0	16.67
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	33.56	16.18
TraesCS4D01G347300.1	Wheat	cytosol	31.99	16.16
TraesCS6D01G154600.1	Wheat	plastid	31.99	15.87
TraesCS7D01G244800.1	Wheat	plastid	31.1	14.91
TraesCS5D01G013400.1	Wheat	plastid	30.43	14.66
TraesCS6D01G010100.1	Wheat	plastid	29.53	14.06
TraesCS5D01G041100.1	Wheat	plastid	27.52	13.02
CDY70916	Canola	cytosol	12.3	10.91
PGSC0003DMT400063654	Potato	cytosol	10.07	9.16
KRH13357	Soybean	endoplasmic reticulum	3.36	6.2
KRH35534	Soybean	cytosol	4.47	4.46
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	3.8	3.33
KRH57987	Soybean	cytosol	0.89	1.55
KRH16725	Soybean	cytosol	0.45	0.87
KRH62403	Soybean	cytosol, endoplasmic reticulum	0.22	0.44
KRH62399	Soybean	cytosol, endoplasmic reticulum	0.0	0.0
TraesCS6D01G122000.1	Wheat	cytosol	0.0	0.0
TraesCS7D01G029400.1	Wheat	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00468	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF54	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS6D01G121900
EnsemblPlants:TraesCS6D01G121900.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:86657104..86659780

Molecular Weight (calculated)

51485.4 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.526

Length

447 amino acids

Sequence
(BLAST)

001: MFGWMTPPQL KGKVVLMRRN LLDLNHWQQP VSHDTWDEVT TKGVTCQLIS STVADPNDES GTRGLLGEEE RVEHWVLHLP PINHGDTTYD VTFDWDVKKQ
101: GIPGAVIVRN YHATQFLLKT ITIDDIPGHA GPIVFVANSW VYNTNKYHYD RVFFTNDTYL PSEMPTLLQP FREDELRILR GDDPRQKNGA YEEHDRVYRY
201: DLYNDLGDPD HKNPRPTLGG PDSLYPYPRR GRTGRKPMVT DPTCESRNVL PVLQQFYVPR DENFNHVKKA DFTAYLIKAI SGGILPLLRQ QFDSVSPREF
301: DDFEDMYKLY EGGLKIPDIP ALDELFKSFP PLRSIMPAGG DFLLKMPMPH VIKEDKLAWR TDEEFAREML AGLNPHIITR LKVFPPRSTL EGYGDQTSKI
401: TVEHIQHNLG KLSVDKAIDA KRLFILDHHD NFMPHLLKIN SLPNTFV

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.