Factsheet for PGSC0003DMT400028158

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	96.87	96.98
PGSC0003DMT400063446	Potato	cytosol	75.64	81.09
PGSC0003DMT400063654	Potato	cytosol	45.36	79.63
PGSC0003DMT400054145	Potato	cytosol	77.61	77.97
PGSC0003DMT400063452	Potato	cytosol	71.69	77.35
VIT_14s0128g00780.t01	Wine grape	cytosol	76.68	76.95
PGSC0003DMT400063461	Potato	cytosol	61.83	76.8
VIT_14s0128g00790.t01	Wine grape	cytosol	75.87	75.26
CDY70916	Canola	cytosol	43.04	73.61
VIT_06s0004g01580.t01	Wine grape	cytosol	28.19	72.54
KRH68548	Soybean	cytosol	71.81	72.14
PGSC0003DMT400063469	Potato	cytosol	68.56	70.11
Bra021322.1-P	Field mustard	cytosol	69.61	70.01
KRH33939	Soybean	cytosol, endoplasmic reticulum	70.07	69.83
PGSC0003DMT400081370	Potato	cytosol	70.65	69.44
AT1G55020.1	Thale cress	cytosol	68.45	68.68
GSMUA_Achr1P22970_001	Banana	cytosol	66.59	67.85
PGSC0003DMT400063477	Potato	cytosol	66.82	67.29
GSMUA_AchrUn_...	Banana	cytosol	64.39	64.91
GSMUA_AchrUn_...	Banana	cytosol	57.89	63.65
TraesCS4A01G275800.1	Wheat	cytosol	17.52	63.18
GSMUA_Achr1P24370_001	Banana	cytosol	61.95	63.05
TraesCS6D01G122000.1	Wheat	cytosol	22.39	62.26
TraesCS4A01G359800.1	Wheat	cytosol	38.17	61.96
GSMUA_Achr9P19250_001	Banana	plasma membrane	68.1	61.72
Os03t0700400-00	Rice	cytosol, plasma membrane	8.93	61.11
GSMUA_Achr6P25110_001	Banana	cytosol	56.03	60.83
EER93612	Sorghum	cytosol	60.67	60.39
GSMUA_Achr6P25090_001	Banana	cytosol	58.7	60.38
Zm00001d033623_P003	Maize	cytosol	60.67	60.32
TraesCS5A01G378800.2	Wheat	cytosol	54.18	60.03
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	60.67	59.64
EER93611	Sorghum	cytosol	61.37	59.57
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	60.56	58.85
TraesCS4A01G275900.1	Wheat	cytosol, unclear	59.86	58.77
TraesCS4D01G035100.1	Wheat	cytosol	59.74	58.66
TraesCS4B01G037800.1	Wheat	cytosol	59.63	58.54
TraesCS5B01G382300.1	Wheat	cytosol, unclear	58.58	58.45
TraesCS5B01G382400.1	Wheat	cytosol, golgi	58.0	58.41
Os03t0699700-01	Rice	cytosol, plastid	58.47	58.4
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	59.4	58.31
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	58.24	58.3
TraesCS4B01G037700.3	Wheat	cytosol, golgi	58.0	58.07
TraesCS4D01G035200.1	Wheat	cytosol	55.8	58.02
TraesCS5A01G378700.1	Wheat	cytosol	58.12	57.99
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	58.12	57.99
Zm00001d033624_P001	Maize	cytosol	59.51	57.84
TraesCS5B01G382600.1	Wheat	cytosol	57.66	57.72
HORVU5Hr1G093770.1	Barley	cytosol	57.77	57.71
TraesCS5A01G378900.1	Wheat	cytosol	57.66	57.52
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	57.66	57.52
EES04025	Sorghum	cytosol	57.89	57.49
Os03t0738600-01	Rice	plasma membrane, plastid	58.0	57.47
EES04028	Sorghum	cytosol	57.54	56.82
KXG37783	Sorghum	cytosol	58.47	56.44
Zm00001d042541_P002	Maize	cytosol	57.66	56.22
TraesCS3B01G602500.1	Wheat	cytosol	57.42	56.19
TraesCS6B01G160400.1	Wheat	mitochondrion	56.38	55.67
TraesCS6A01G132500.1	Wheat	mitochondrion	56.38	55.67
TraesCS6A01G132200.1	Wheat	mitochondrion	56.38	55.67
GSMUA_Achr6P25080_001	Banana	cytosol	50.0	55.61
TraesCS5A01G379000.1	Wheat	nucleus, unclear	49.54	55.45
TraesCS5D01G388800.1	Wheat	cytosol	57.66	55.41
Zm00001d042540_P008	Maize	cytosol	57.31	55.38
TraesCS3B01G605700.1	Wheat	cytosol	56.84	55.37
TraesCS5D01G513100.1	Wheat	cytosol	55.57	55.18
HORVU5Hr1G117110.1	Barley	cytosol	55.8	54.23
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	30.16	53.28
Os11t0575600-01	Rice	mitochondrion	52.67	52.3
TraesCS6B01G395700.1	Wheat	cytosol	47.33	50.25
PGSC0003DMT400034472	Potato	cytosol	25.87	49.89
PGSC0003DMT400074322	Potato	cytosol	25.52	49.77
CDY43490	Canola	cytosol, plasma membrane	69.26	49.63
TraesCS6D01G121900.1	Wheat	mitochondrion	24.48	47.2
PGSC0003DMT400020118	Potato	cytosol	37.24	46.32
PGSC0003DMT400058933	Potato	plastid	43.74	41.25
PGSC0003DMT400081909	Potato	plastid	42.69	40.93
PGSC0003DMT400045047	Potato	cytosol, plastid	42.46	40.22
PGSC0003DMT400074324	Potato	cytosol	13.69	34.1
GSMUA_Achr6P25100_001	Banana	cytosol	48.72	3.5

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ProteinID:AAB67865	ProteinID:AAB67865.1	CHEMBL:CHEMBL2189149	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1AQS2
PFAM:PF00305	PFAM:PF01477	EnsemblPlantsGene:PGSC0003DMG400010859	PGSC:PGSC0003DMG400010859	EnsemblPlants:PGSC0003DMT400028158	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
EMBL:U60202	UniParc:UPI0002958278	:	:	:	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400010859]

Coordinates

chr8:+:17827204..17831384

Molecular Weight (calculated)

97739.4 Da

IEP (calculated)

5.579

GRAVY (calculated)

-0.389

Length

862 amino acids

Sequence
(BLAST)

001: MLLEKIVEAI SGRSEDNGKK VKGTVVLMKK NVLDFNDVNA SLLDGVLEFL GKRVSLQLIS VVHADPGNSL QGKRSNPAYL EKWLTTGTSL VAGESAFDVT
101: FDWDEDIGVP GAFIINNFHF NEFYLKSLTL EDVPNHGNVH FVCNSWVYPA KKYKSERIFF ANQAYLPGET PEPLRNYREK ELVNLRGNGN GKLEEWDRVY
201: DYALYNDLGD PEKGKQYART ILGGSAEYPY PRRGRTGRKP TKADPKSESR IPLLMSLDIY VPRDERFGHI KLSDFLTYAL KSIVQFLIPE FQALFDSTPD
301: EFDSFEDVLK LYEGGIKLPQ GPFLKALTDS IPLEILKEII RTDGEGKFKF PAPQVIQEDK SSWRTDEEFA REMLAGVNPV IISRLQEFPP KSQLDSEVYG
401: NQNSTITKEH IENTLDGLTI DDAIKTNRLY ILNHHDILMP YVRRINTTNT KLYASRTLLF LQDDGTMKPV AIELSLPHPD GDELGAVSKV YTPADQGVEG
501: SIWQLAKAYV AVNDSGVHQL ISHWLNTHAA IEPFVIATNR QLSVLHPIHK LLHPHFRDTM NINALARQIL INAGGVLEMT VFPAKYAMEM SAVVYKSWVF
601: PEQALPADLI KRGVAVEDSS SPHGVRLLIQ DYPYAVDGLE IWSAIKSWVT EYCNFYYKSD ELVLKDNELQ AWWKELREEG HGDKKDEPWW PKMQTRQELK
701: DSCTIIIWIA SALHAAVNFG QYPYAGYLPN RPTLSRRFMP EPGTPEYEEL KTNPDKAYLK TITPQLQTLL GISLIEILSR HASDEIYLGQ RDSSEWTKDQ
801: EPIAAFERFG KKLSEIEDQI IQMNGDKKWK NRSGPVNVPY TLLFPTSEQG LTGKGIPNSV SI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.