Factsheet for PGSC0003DMT400063469

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099200.2.1	Tomato	cytosol, plastid	93.83	94.05
PGSC0003DMT400063654	Potato	cytosol	41.99	72.1
CDY70916	Canola	cytosol	41.99	70.24
PGSC0003DMT400028158	Potato	cytosol	70.11	68.56
VIT_14s0128g00780.t01	Wine grape	cytosol	67.62	66.36
PGSC0003DMT400063446	Potato	cytosol	63.11	66.17
VIT_14s0128g00790.t01	Wine grape	cytosol	67.5	65.48
KRH68548	Soybean	cytosol	66.31	65.15
PGSC0003DMT400054145	Potato	cytosol	65.95	64.8
PGSC0003DMT400063452	Potato	cytosol	61.09	64.46
PGSC0003DMT400063477	Potato	cytosol	65.01	64.02
VIT_06s0004g01580.t01	Wine grape	cytosol	25.39	63.88
KRH33939	Soybean	cytosol, endoplasmic reticulum	65.48	63.81
PGSC0003DMT400063461	Potato	cytosol	52.19	63.4
Bra021322.1-P	Field mustard	cytosol	64.29	63.24
AT1G55020.1	Thale cress	cytosol	63.11	61.93
TraesCS4A01G275800.1	Wheat	cytosol	17.44	61.51
PGSC0003DMT400081370	Potato	cytosol	63.7	61.23
TraesCS6D01G122000.1	Wheat	cytosol	22.3	60.65
GSMUA_AchrUn_...	Banana	cytosol	60.97	60.12
GSMUA_AchrUn_...	Banana	cytosol	55.87	60.08
Os03t0700400-00	Rice	cytosol, plasma membrane	8.9	59.52
GSMUA_Achr1P22970_001	Banana	cytosol	59.67	59.46
GSMUA_Achr1P24370_001	Banana	cytosol	59.67	59.39
TraesCS4A01G359800.1	Wheat	cytosol	36.89	58.57
GSMUA_Achr6P25090_001	Banana	cytosol	56.47	56.8
GSMUA_Achr6P25110_001	Banana	cytosol	53.5	56.8
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	58.6	56.33
EER93612	Sorghum	cytosol	57.65	56.12
TraesCS5A01G378800.2	Wheat	cytosol	51.72	56.04
Zm00001d033623_P003	Maize	cytosol	56.94	55.36
Os03t0699700-01	Rice	cytosol, plastid	56.35	55.04
GSMUA_Achr9P19250_001	Banana	plasma membrane	61.45	54.47
EER93611	Sorghum	cytosol	57.3	54.39
Os03t0738600-01	Rice	plasma membrane, plastid	55.52	53.79
TraesCS5B01G382400.1	Wheat	cytosol, golgi	54.45	53.62
TraesCS4B01G037800.1	Wheat	cytosol	55.75	53.53
TraesCS4A01G275900.1	Wheat	cytosol, unclear	55.75	53.53
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	56.23	53.44
TraesCS4D01G035100.1	Wheat	cytosol	55.63	53.42
TraesCS5B01G382600.1	Wheat	cytosol	54.45	53.31
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	54.33	53.19
TraesCS5B01G382300.1	Wheat	cytosol, unclear	54.45	53.12
EES04025	Sorghum	cytosol	54.69	53.11
HORVU5Hr1G093770.1	Barley	cytosol	54.33	53.07
EES04028	Sorghum	cytosol	54.92	53.04
TraesCS5A01G378900.1	Wheat	cytosol	54.21	52.89
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	54.21	52.89
Zm00001d033624_P001	Maize	cytosol	55.63	52.87
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	55.04	52.85
TraesCS4D01G035200.1	Wheat	cytosol	51.96	52.83
TraesCS6A01G132200.1	Wheat	mitochondrion	54.57	52.69
TraesCS6A01G132500.1	Wheat	mitochondrion	54.57	52.69
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	53.97	52.66
TraesCS5A01G378700.1	Wheat	cytosol	53.97	52.66
TraesCS6B01G160400.1	Wheat	mitochondrion	54.45	52.58
TraesCS4B01G037700.3	Wheat	cytosol, golgi	53.62	52.5
KXG37783	Sorghum	cytosol	55.4	52.3
Zm00001d042541_P002	Maize	cytosol	54.69	52.15
TraesCS3B01G602500.1	Wheat	cytosol	54.33	51.99
Zm00001d042540_P008	Maize	cytosol	54.69	51.68
TraesCS3B01G605700.1	Wheat	cytosol	53.74	51.19
TraesCS5D01G388800.1	Wheat	cytosol	54.33	51.06
TraesCS5A01G379000.1	Wheat	nucleus, unclear	46.5	50.91
TraesCS5D01G513100.1	Wheat	cytosol	51.96	50.46
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	29.06	50.2
PGSC0003DMT400034472	Potato	cytosol	26.57	50.11
HORVU5Hr1G117110.1	Barley	cytosol	52.55	49.94
Os11t0575600-01	Rice	mitochondrion	50.65	49.19
GSMUA_Achr6P25080_001	Banana	cytosol	44.96	48.9
PGSC0003DMT400074322	Potato	cytosol	25.39	48.42
TraesCS6B01G395700.1	Wheat	cytosol	45.91	47.66
CDY43490	Canola	cytosol, plasma membrane	64.06	44.89
PGSC0003DMT400020118	Potato	cytosol	36.65	44.59
TraesCS6D01G121900.1	Wheat	mitochondrion	23.49	44.3
PGSC0003DMT400045047	Potato	cytosol, plastid	43.53	40.33
PGSC0003DMT400058933	Potato	plastid	43.42	40.04
PGSC0003DMT400081909	Potato	plastid	42.11	39.49
PGSC0003DMT400074324	Potato	cytosol	13.17	32.08
GSMUA_Achr6P25100_001	Banana	cytosol	43.89	3.08

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1CAP8	PFAM:PF00305	PFAM:PF01477
EnsemblPlantsGene:PGSC0003DMG400024692	PGSC:PGSC0003DMG400024692	EnsemblPlants:PGSC0003DMT400063469	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00029582A3	SEG:seg	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400024692]

Coordinates

chr1:+:77007837..77011385

Molecular Weight (calculated)

96183.3 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.434

Length

843 amino acids

Sequence
(BLAST)

001: MASTSKLESK KINGTVVLVK KRALELVPSE VVQQQTYEIL GDKVILQLIS SVNGDSENKG KLGNPTHLRD ESKVGNESKF SVTFDLDEEF GAPGAFIIKN
101: FNPSEFFLKK LTLEVEVDDP SHGGMHFVCN SWVYPAEKYK SDRIFFVNQA WLPSETPVKL RWYREEELLN LRGNGIGKLE EWDRVYDYAY YNDLGDPEKG
201: STYVRPILGG STKYPYPRRG RTSRPPTKTD PNSESRLPLL MSFGIYVPRD EKFAPLKMTD FIRIALKVIV QLLVPELESL GNINLNEFNS FEDILKIYGG
301: GINLPEDVLQ RSSTEMIKEF IQSSGQEFLK YPMPQVIKED KSAWRTDEEF AREMLAGINP VCICGLKEFP PTSKLDPKVY GDQTSNITRE HIQNQLDGLT
401: IEEAIKANQL FILNHHDTFM PYMRQINMTS TKIYASRTLL FLQKDGTLKL LGIELSLPHP DGDQHGFISK VFTPQEYGTE ASIWQLAKAY VAVNDSGVHQ
501: LISHWLHTHA TIEPIVIATN RQLSVFHPMY KLLHPHFRDT MHINALARQT LLNAGGILEQ TVFPTKYAME MTSAAYKDWV FPEQALPADL IKRGVAIEDP
601: ESEKGIRLLI QDYPYAVDGL EIWSAIKSWV QEYCTIYYKT DDMIQKDTEL QAWWKELQEE GHGDKKDEPW WPKMQTLKEL TDSCTIIIWI ASALHAAINF
701: GQYPYGGYLP NRPSMSRKLM PEPGSPEYEE LKTNPEKGYL STITPQLQTL IGISAIEILS THSSDEIYLG QRDTPKWTND KEPLQALERF GKKLTEIEEK
801: IIKMNNDKKW KNRMGPIKMP YTLLYPISEP GLTGKGIPNS VSI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.