Factsheet for TraesCS5D01G388700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G382300.1	Wheat	cytosol, unclear	98.73	98.73
TraesCS5A01G378700.1	Wheat	cytosol	98.5	98.5
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	94.33	94.33
TraesCS5D01G388800.1	Wheat	cytosol	82.75	79.71
TraesCS5D01G513100.1	Wheat	cytosol	79.98	79.61
Os03t0738600-01	Rice	plasma membrane, plastid	76.62	76.09
EES04025	Sorghum	cytosol	75.23	74.88
EES04028	Sorghum	cytosol	75.46	74.69
Zm00001d042541_P002	Maize	cytosol	75.35	73.64
TraesCS4D01G035200.1	Wheat	cytosol	70.14	73.1
Zm00001d042540_P008	Maize	cytosol	74.31	71.97
TraesCS6D01G122000.1	Wheat	cytosol	23.96	66.77
TraesCS4D01G035100.1	Wheat	cytosol	64.12	63.1
CDY70916	Canola	cytosol	36.69	62.9
KRH35534	Soybean	cytosol	31.37	60.49
PGSC0003DMT400063654	Potato	cytosol	34.14	60.08
KRH16725	Soybean	cytosol	15.97	59.74
GSMUA_Achr1P22970_001	Banana	cytosol	58.33	59.57
VIT_14s0128g00780.t01	Wine grape	cytosol	58.8	59.14
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	58.1	58.3
PGSC0003DMT400028158	Potato	cytosol	57.99	58.12
VIT_14s0128g00790.t01	Wine grape	cytosol	58.45	58.11
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.86	58.05
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	57.87	58.0
Bra021322.1-P	Field mustard	cytosol	57.29	57.76
PGSC0003DMT400063446	Potato	cytosol	53.36	57.34
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	56.94	57.21
PGSC0003DMT400054145	Potato	cytosol	56.71	57.11
KRH57987	Soybean	cytosol	17.01	56.98
PGSC0003DMT400063461	Potato	cytosol	45.25	56.34
Solyc01g099180.2.1	Tomato	cytosol	55.67	56.32
Solyc09g075860.2.1	Tomato	cytosol, nucleus	56.94	56.1
AT1G55020.1	Thale cress	cytosol	55.67	56.0
PGSC0003DMT400081370	Potato	cytosol	56.71	55.87
TraesCS6D01G121900.1	Wheat	mitochondrion	28.82	55.7
VIT_05s0020g03170.t01	Wine grape	cytosol	56.25	55.48
KRG91271	Soybean	cytosol	55.09	55.48
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.47	55.07
KRH33939	Soybean	cytosol, endoplasmic reticulum	55.09	55.03
PGSC0003DMT400063477	Potato	cytosol	54.51	55.02
KRH68548	Soybean	cytosol	54.51	54.9
Solyc01g099210.2.1	Tomato	cytosol	54.75	54.81
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	54.4	54.78
Solyc01g099200.2.1	Tomato	cytosol, plastid	53.12	54.58
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.51	54.39
PGSC0003DMT400063452	Potato	cytosol	50.23	54.32
KRH23266	Soybean	cytosol	51.85	54.24
PGSC0003DMT400063469	Potato	cytosol	52.89	54.21
KRH10050	Soybean	endoplasmic reticulum	53.59	54.03
KRH44093	Soybean	endoplasmic reticulum	52.78	53.9
Bra039948.1-P	Field mustard	cytosol	55.21	53.78
KRH10051	Soybean	endoplasmic reticulum, nucleus	53.12	53.62
KRH44095	Soybean	endoplasmic reticulum	53.7	53.58
KRH44090	Soybean	endoplasmic reticulum	53.12	53.37
CDY38326	Canola	cytosol	54.75	53.33
KRH10053	Soybean	endoplasmic reticulum	52.55	53.22
AT3G22400.1	Thale cress	cytosol	54.4	53.05
KRH47522	Soybean	endoplasmic reticulum, nucleus	52.89	52.83
Solyc09g075870.1.1	Tomato	cytosol	52.2	52.81
KRH44097	Soybean	cytosol, endoplasmic reticulum	53.01	52.77
CDY46325	Canola	cytosol	53.82	52.72
KRH47067	Soybean	endoplasmic reticulum	52.55	52.55
KRH13357	Soybean	endoplasmic reticulum	14.7	52.48
KRH23268	Soybean	endoplasmic reticulum	51.74	52.4
KRH47066	Soybean	endoplasmic reticulum, nucleus	52.08	52.39
KRH47525	Soybean	endoplasmic reticulum	52.31	52.07
Bra023829.1-P	Field mustard	cytosol	54.28	51.94
KRH44094	Soybean	endoplasmic reticulum	51.97	51.79
CDY64191	Canola	cytosol	54.17	51.6
KRH23269	Soybean	endoplasmic reticulum	49.07	51.58
KRH47069	Soybean	endoplasmic reticulum	26.74	50.77
VIT_06s0004g01580.t01	Wine grape	cytosol	19.68	50.75
KRG88464	Soybean	cytosol	25.81	48.9
KRH44092	Soybean	nucleus	48.15	48.54
KRH47064	Soybean	endoplasmic reticulum	31.02	47.02
TraesCS7D01G029400.1	Wheat	cytosol	14.24	46.42
TraesCS1D01G215800.2	Wheat	cytosol	44.79	45.74
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	25.23	42.66
CDY43490	Canola	cytosol, plasma membrane	57.29	41.15
Solyc01g099150.2.1	Tomato	nucleus	40.74	40.84
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	42.13	39.91
TraesCS2D01G313400.1	Wheat	plastid	40.74	38.68
TraesCS4D01G347300.1	Wheat	cytosol	39.35	38.42
TraesCS4D01G294100.1	Wheat	plastid	40.86	38.29
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	40.74	37.97
TraesCS7D01G244800.1	Wheat	plastid	39.12	36.27
TraesCS5D01G013400.1	Wheat	plastid	38.89	36.21
TraesCS6D01G154600.1	Wheat	plastid	37.62	36.07
TraesCS6D01G010100.1	Wheat	plastid	38.43	35.36
TraesCS5D01G041100.1	Wheat	plastid	37.38	34.18

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF54	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS5D01G388700
EnsemblPlants:TraesCS5D01G388700.1	TIGR:cd01751	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:458094790..458098098

Molecular Weight (calculated)

96566.5 Da

IEP (calculated)

6.635

GRAVY (calculated)

-0.283

Length

864 amino acids

Sequence
(BLAST)

001: MFGVGGIVSD LTGGLRGPHL KGSVVLMRKN ALDFNDFGAT VMDGVTELLG RGVTCQLISS THVDHNNGGR GKVGAEANLE QWLLPTNLPF ITTGENKFAV
101: TFDWSVDKLG VPGAIIVKNN HAAEFFLKTI TLDNVPGRGT VVFVANSWVY PQAKYRYNRV FFANDTYLPH QMPAALKPYR DDELRNLRGD DQQGPYEDHD
201: RVYRYDVYND LGDTRDVLGG SKDLPYPRRC RTGRKPSATK PDHESRLLPL VGNVYVPRDE LFGHLKQSDF LGYTLKALVD GIVPAIRTYV DLSPGEFDSF
301: ADILKLYEGG IKLPNIPALE EVRKRFPLQL VKDLIPMGGD FLLKLPKPQI IKADEKAWMT DEEFAREMLA GVNPMMIKRL TEFPPKSTLD PSKYGDHTST
401: ITEAHIGRSL EGLTVEQALA DNRLYIVDQH DNLMPFLVDI NNLDGSFVYA TRTLLFLQGN GTLAPVAIEL SSPLIQGDLT TAKSTVYTPQ HAGVEGWIWQ
501: LAKAYASVND YGWHQLISHW LNTHAVMEPF VIATNRQLSV THPVYKLLHP HYRDTMNINA RARGLLINAG GVIEMTVFPR KHAMPMSSMV YKNWNFTEQA
601: LPDDLIKRGM AVEDPSSPHK VRLLIEDYPY AADGLAVWHA IEQWVTDYLT IYYPNDGVLQ GDVELQAWWK EVREVGHGDL KDAAWWPKMH TVAELIKACA
701: TIIWTGSALH AAVNFGQYPY SGYHPNKPSA SRRPMPSPGS EEYALLERAP EKAFILTITN QFQALVGISL MEILSKHSSD EVYLGQHDTP AWTSDAKAQE
801: AFRRFGARLE GIEKQVVAMN GDPRLKNRTG PAKFPYMLLY PNTSDHTGQA EGLTARGIPN SISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.