Factsheet for Solyc01g099160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099180.2.1	Tomato	cytosol	81.67	82.44
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	81.79	81.88
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	78.77	79.14
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	76.8	76.98
VIT_14s0128g00780.t01	Wine grape	cytosol	74.13	74.39
VIT_14s0128g00790.t01	Wine grape	cytosol	73.9	73.3
VIT_06s0004g01580.t01	Wine grape	cytosol	28.31	72.84
CDY70916	Canola	cytosol	42.58	72.82
KRH68548	Soybean	cytosol	70.42	70.75
Bra021322.1-P	Field mustard	cytosol	69.72	70.13
Solyc01g099200.2.1	Tomato	cytosol, plastid	67.75	69.44
KRH33939	Soybean	cytosol, endoplasmic reticulum	68.91	68.67
GSMUA_Achr1P22970_001	Banana	cytosol	67.17	68.44
AT1G55020.1	Thale cress	cytosol	67.98	68.22
Solyc09g075860.2.1	Tomato	cytosol, nucleus	67.63	66.48
Solyc01g099210.2.1	Tomato	cytosol	65.2	65.12
GSMUA_AchrUn_...	Banana	cytosol	64.15	64.68
Solyc01g099150.2.1	Tomato	nucleus	63.92	63.92
GSMUA_AchrUn_...	Banana	cytosol	58.0	63.78
TraesCS4A01G275800.1	Wheat	cytosol	17.63	63.6
Os03t0700400-00	Rice	cytosol, plasma membrane	9.28	63.49
Solyc09g075870.1.1	Tomato	cytosol	62.76	63.35
GSMUA_Achr1P24370_001	Banana	cytosol	62.06	63.16
GSMUA_Achr6P25110_001	Banana	cytosol	56.38	61.21
GSMUA_Achr6P25090_001	Banana	cytosol	59.4	61.1
TraesCS4A01G359800.1	Wheat	cytosol	37.59	61.02
TraesCS6D01G122000.1	Wheat	cytosol	21.93	60.97
GSMUA_Achr9P19250_001	Banana	plasma membrane	67.17	60.88
EER93612	Sorghum	cytosol	61.02	60.74
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	35.96	60.67
Zm00001d033623_P003	Maize	cytosol	60.67	60.32
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	61.14	60.09
TraesCS5A01G378800.2	Wheat	cytosol	53.6	59.38
EER93611	Sorghum	cytosol	61.02	59.23
TraesCS4D01G035100.1	Wheat	cytosol	60.09	59.0
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	58.82	58.88
TraesCS4A01G275900.1	Wheat	cytosol, unclear	59.98	58.88
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	60.44	58.74
TraesCS4B01G037800.1	Wheat	cytosol	59.63	58.54
EES04025	Sorghum	cytosol	58.93	58.53
Os03t0699700-01	Rice	cytosol, plastid	58.58	58.52
Zm00001d033624_P001	Maize	cytosol	60.21	58.51
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	59.51	58.43
TraesCS4B01G037700.3	Wheat	cytosol, golgi	58.24	58.3
TraesCS4D01G035200.1	Wheat	cytosol	56.03	58.26
TraesCS5B01G382300.1	Wheat	cytosol, unclear	58.35	58.22
TraesCS5B01G382600.1	Wheat	cytosol	58.12	58.19
TraesCS5B01G382400.1	Wheat	cytosol, golgi	57.77	58.18
HORVU5Hr1G093770.1	Barley	cytosol	58.24	58.17
Os03t0738600-01	Rice	plasma membrane, plastid	58.7	58.16
TraesCS5A01G378900.1	Wheat	cytosol	58.12	57.99
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	58.0	57.87
TraesCS5A01G378700.1	Wheat	cytosol	57.89	57.75
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	57.66	57.52
Zm00001d042541_P002	Maize	cytosol	58.82	57.35
KXG37783	Sorghum	cytosol	59.16	57.11
EES04028	Sorghum	cytosol	57.66	56.93
TraesCS3B01G602500.1	Wheat	cytosol	57.77	56.53
TraesCS5A01G379000.1	Wheat	nucleus, unclear	50.0	55.97
GSMUA_Achr6P25080_001	Banana	cytosol	50.12	55.74
TraesCS5D01G388800.1	Wheat	cytosol	58.0	55.74
TraesCS3B01G605700.1	Wheat	cytosol	57.19	55.71
TraesCS6B01G160400.1	Wheat	mitochondrion	56.38	55.67
TraesCS6A01G132200.1	Wheat	mitochondrion	56.26	55.56
TraesCS6A01G132500.1	Wheat	mitochondrion	56.26	55.56
Zm00001d042540_P008	Maize	cytosol	57.19	55.27
TraesCS5D01G513100.1	Wheat	cytosol	54.18	53.8
HORVU5Hr1G117110.1	Barley	cytosol	54.99	53.44
Os11t0575600-01	Rice	mitochondrion	53.71	53.34
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	29.12	51.43
TraesCS6B01G395700.1	Wheat	cytosol	48.38	51.35
CDY43490	Canola	cytosol, plasma membrane	69.37	49.71
Solyc09g055900.2.1	Tomato	cytosol	26.33	49.13
Solyc01g009680.2.1	Tomato	plastid	25.06	48.76
TraesCS6D01G121900.1	Wheat	mitochondrion	25.06	48.32
Solyc03g122340.2.1	Tomato	cytosol	44.32	42.07
Solyc05g014790.2.1	Tomato	plastid	43.04	40.72
Solyc01g006540.2.1	Tomato	plastid	41.42	39.84
Solyc01g006560.2.1	Tomato	plastid	41.65	39.8
Solyc12g011040.1.1	Tomato	nucleus, plastid	40.6	39.24
Solyc09g055890.2.1	Tomato	cytosol	15.2	35.31
GSMUA_Achr6P25100_001	Banana	cytosol	48.72	3.5

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EMBL:AY008278	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	UniProt:Q9FT17	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	EnsemblPlantsGene:Solyc01g099160.2	EnsemblPlants:Solyc01g099160.2.1	UniParc:UPI00000A38B0	SEG:seg	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:Q9FT17]

Coordinates

chr1:+:89475688..89483138

Molecular Weight (calculated)

97510.1 Da

IEP (calculated)

5.270

GRAVY (calculated)

-0.347

Length

862 amino acids

Sequence
(BLAST)

001: MILNKIVDSI TGKDDGEKVK GTVVLMKKNV LDFTDVTASI VDGALEFLGR RVSFQLISNS VHDANGLEGK LSNPAYLENW ITNITPVVAG ESTFSVTFDW
101: DDDEFGVPGA FIIKNLHFSE FFLKSLTLEH VPNHGKVHFV CNSWVYPASK YKSDRIFFAN QAYLPSETPE LLRKYRENEL VALRGDGTGK LEEWDRVYDY
201: AYYNDLGDPD KGQEYARPVL GGSSQYPYPR RGRTGRKPTK TDPNTESRIP LLMSLDIYVP RDERFGHVKM SDFLTFALKS ISQLLLPEFK ALFDSTPNEF
301: DSFADVLKIY EGGIKLPQGP LFKAIVDAIP LEILKQLLST DGEGLLKYPT PQVIQEDKSA WRTDEEFGRE MLAGINPVII SRLQEFPPKS KLDPKIYGNQ
401: TSTITREQIE DKLDGLTVDE AVKTNRLFIL NHHDILMPYV RRINTTTNTK MYATRTLLFL QDDGTLKPLA IELSLPHPDG DQFGAVSEVF TPSDQGVEGS
501: IWQLAKAYAA VNDSGVHQLV SHWLNTHTVI EPFVIATNRQ LSVLHPIHKL LLPHFRDTMN INALARQILI NGGGLLELTV FPAKYSMELS SVIYKDWIFP
601: EQALPADLIK RGVAVEDSNS PHGVRLLIQD YPYAVDGLEI WSAIKSWVTE YCNYYYKSDD AVQKDAELQA WWKELREEGH GDKKDEPWWP KMQSVQELID
701: SCTITIWIAS ALHAAVNFGQ YPYAGYLPNR PTLSRKFMPE PGSAEYEELK RNPDNVFLKT ITPQLQTLVG ISLIELLSRH ASDTLYLGQR DSPEWTKDQE
801: PLSAFERFGK KLGEIEDRII QMNGDNQKWK NRSGPVKVPY TLLFPTSEEG LTGKGIPNSV SI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.