Factsheet for Zm00001d042541_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04025	Sorghum	cytosol	91.18	92.86
Zm00001d042540_P008	Maize	cytosol	81.79	81.05
Os03t0738600-01	Rice	plasma membrane, plastid	76.24	77.47
TraesCS5B01G382300.1	Wheat	cytosol, unclear	74.21	75.93
Zm00001d033623_P003	Maize	cytosol	74.32	75.78
TraesCS5A01G378800.2	Wheat	cytosol	66.52	75.58
TraesCS5A01G378700.1	Wheat	cytosol	73.76	75.46
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	73.64	75.35
TraesCS4A01G359800.1	Wheat	cytosol	45.02	74.95
TraesCS5B01G382400.1	Wheat	cytosol, golgi	72.51	74.88
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	73.08	74.77
TraesCS5B01G382600.1	Wheat	cytosol	72.62	74.56
TraesCS5A01G378900.1	Wheat	cytosol	72.4	74.07
HORVU5Hr1G093770.1	Barley	cytosol	72.29	74.04
TraesCS5D01G388800.1	Wheat	cytosol	73.08	72.02
TraesCS5A01G379000.1	Wheat	nucleus, unclear	61.76	70.91
TraesCS5D01G513100.1	Wheat	cytosol	66.4	67.63
HORVU5Hr1G117110.1	Barley	cytosol	66.18	65.95
Zm00001d033624_P001	Maize	cytosol	63.69	63.47
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	63.24	63.02
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	34.73	62.91
CDY70916	Canola	cytosol	35.07	61.51
KRH16725	Soybean	cytosol	16.06	61.47
KRH35534	Soybean	cytosol	31.0	61.16
GSMUA_Achr1P22970_001	Banana	cytosol	57.35	59.93
PGSC0003DMT400063654	Potato	cytosol	32.92	59.27
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.72	58.9
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	57.35	58.82
PGSC0003DMT400063446	Potato	cytosol	52.94	58.21
VIT_14s0128g00780.t01	Wine grape	cytosol	56.11	57.74
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	56.22	57.72
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.82	57.71
PGSC0003DMT400028158	Potato	cytosol	56.22	57.66
KRH57987	Soybean	cytosol	16.74	57.36
Bra021322.1-P	Field mustard	cytosol	55.43	57.18
KRH68548	Soybean	cytosol	55.2	56.88
VIT_14s0128g00790.t01	Wine grape	cytosol	55.54	56.5
PGSC0003DMT400054145	Potato	cytosol	54.75	56.41
AT1G55020.1	Thale cress	cytosol	54.75	56.34
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	54.75	56.28
Solyc09g075860.2.1	Tomato	cytosol, nucleus	55.77	56.21
PGSC0003DMT400081370	Potato	cytosol	55.77	56.21
Solyc01g099180.2.1	Tomato	cytosol	54.19	56.09
VIT_05s0020g03170.t01	Wine grape	cytosol	55.09	55.59
KRH33939	Soybean	cytosol, endoplasmic reticulum	54.3	55.49
PGSC0003DMT400063452	Potato	cytosol	50.11	55.44
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	53.62	55.24
KRH10050	Soybean	endoplasmic reticulum	53.51	55.19
PGSC0003DMT400063461	Potato	cytosol	43.33	55.19
KRG91271	Soybean	cytosol	53.51	55.13
KRH13357	Soybean	endoplasmic reticulum	15.05	54.96
PGSC0003DMT400063477	Potato	cytosol	53.17	54.91
Solyc01g099200.2.1	Tomato	cytosol, plastid	52.15	54.82
Solyc01g099210.2.1	Tomato	cytosol	53.51	54.81
PGSC0003DMT400063469	Potato	cytosol	52.15	54.69
KRH10051	Soybean	endoplasmic reticulum, nucleus	52.6	54.32
KRH23265	Soybean	endoplasmic reticulum, nucleus	53.05	54.16
KRH10053	Soybean	endoplasmic reticulum	52.15	54.04
AT3G22400.1	Thale cress	cytosol	54.07	53.95
Solyc09g075870.1.1	Tomato	cytosol	52.04	53.86
KRH44090	Soybean	endoplasmic reticulum	52.38	53.84
KRH23268	Soybean	endoplasmic reticulum	51.92	53.81
KRH44093	Soybean	endoplasmic reticulum	51.47	53.78
KRH47522	Soybean	endoplasmic reticulum, nucleus	52.49	53.64
CDY46325	Canola	cytosol	53.17	53.29
KRH23266	Soybean	cytosol	49.77	53.27
KRH47066	Soybean	endoplasmic reticulum, nucleus	51.58	53.09
Bra039948.1-P	Field mustard	cytosol	53.17	52.99
KRH44095	Soybean	endoplasmic reticulum	51.81	52.89
KRH44097	Soybean	cytosol, endoplasmic reticulum	51.81	52.77
KRH47067	Soybean	endoplasmic reticulum	51.47	52.66
CDY38326	Canola	cytosol	52.83	52.65
KRH23269	Soybean	endoplasmic reticulum	48.87	52.55
KRH47525	Soybean	endoplasmic reticulum	51.58	52.53
Bra023829.1-P	Field mustard	cytosol	53.39	52.27
CDY64191	Canola	cytosol	53.17	51.82
KRH44094	Soybean	endoplasmic reticulum	50.23	51.21
VIT_06s0004g01580.t01	Wine grape	cytosol	19.12	50.45
KRH47069	Soybean	endoplasmic reticulum	25.45	49.45
KRG88464	Soybean	cytosol	25.11	48.68
KRH44092	Soybean	nucleus	46.72	48.19
KRH47064	Soybean	endoplasmic reticulum	29.98	46.49
Zm00001d041204_P001	Maize	cytosol	44.0	45.76
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	24.89	43.05
Solyc01g099150.2.1	Tomato	nucleus	40.95	42.0
CDY43490	Canola	cytosol, plasma membrane	55.32	40.65
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	40.84	39.93
Zm00001d025524_P001	Maize	plastid	40.05	38.11
Zm00001d003533_P001	Maize	plastid	40.5	38.04
Zm00001d053675_P001	Maize	plastid	38.91	38.01
Zm00001d015852_P004	Maize	plastid	38.8	37.65
Zm00001d027893_P001	Maize	plastid	40.38	36.88
Zm00001d031449_P001	Maize	mitochondrion	39.37	36.4

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EntrezGene:541856	UniProt:A0A1D6N531	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	ProteinID:ONM35737.1	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF54	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000842F427	EnsemblPlantsGene:Zm00001d042541	EnsemblPlants:Zm00001d042541_P002	EnsemblPlants:Zm00001d042541_T002
SEG:seg	:	:	:	:	:

Description

lipoxygenase1 lipoxygenase2

Coordinates

chr3:+:171421717..171425401

Molecular Weight (calculated)

99334.5 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.336

Length

884 amino acids

Sequence
(BLAST)

001: MFGNIGKIPI IGDLTGSNKN AHLKGNVVLV RKTVLGLDVT SIAGSLLDGI GEFLGRGVTC QLISSTVVDP TTLTGARVHR ADNGNRGKLG AEASLEQWLL
101: NPPPLLSSEN QFRVTFDWEV EKQGIPGAII VKNNHASEFF LKTITLNDVP GHGTIVFVAN SWIYPQSKYR YNRVFFSNDT YLPSQMPAAL KPYRDDELRN
201: LRGDDQQGPY QEHDRVYRYD VYNDLGLPDS GNPRPVLGGT KELPYPRRCR TGRKPTKSDP NSESRLTLVD GDVYVPRDER FGHIKKSDFY GYAIKALVNA
301: VIPAIRTYVD LSPGEFDSFK DIMKLYEGGI QLPKIPALED LRKQFPLELV KDVLPVGGDY LLKLPMPQII KEDKTGWMTD EEFGREILAG VNPMLVKRLT
401: EFPPRSSLDP SKYGDHTSTI READLENKLE GLTVQQALHG NRLYILDHHD NFMPFLVRVN SLEGNFIYAT RTVLFLRGDG TLVPVAIELS LPELRDGLTT
501: AKSTVYTPKS TTGAEAWVWH LAKAYANVND YCWHQLISHW LNTHAVMEPF VIATNRQLSV THPVHKLLLP HYRDTMNINS NARQMLVNAG GIFETTVFPR
601: QYAFEMSSVI YKDWNFTEQA LPDDLIKRGM AVADPSSPYK VRLLVEDYPY ASDGLAIWHA IEQWVTEYLA VYYPNDGVLR ADVELQAWWK EAREVGHADL
701: KDAPWWPKMQ TVAELVKACT TIIWIASALH AAVNFGQYPY AGYLPNRPSV SRKPMPAPGS DEYAELERKP EKVFVRTITS QFQALVGISL LEILSSHSSD
801: EVYLGQRDTK EWTSDAKAQE AFKRFGARLT EIEKRVVTMN ADPRLKNRNG PAEFPYTLLY PNTSDTKGDA AGITAKGIPN SISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.