Factsheet for Zm00001d015852_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014065_P001
Zm00001d028515_P001
Zm00001d032775_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Zm00001d028515_P001	AT5G18110.1	11117257
AT3G45140.1	Zm00001d014065_P001	AT5G35620.1	11117257
AT3G45140.1	Zm00001d032775_P002	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053675_P001	Maize	plastid	88.58	89.17
KXG29701	Sorghum	plastid	87.6	87.02
HORVU6Hr1G033600.1	Barley	plastid	71.02	72.21
TraesCS6B01G193400.1	Wheat	plastid	71.24	72.03
TraesCS6D01G154600.1	Wheat	plastid	71.13	71.92
TraesCS6A01G166000.1	Wheat	golgi	71.02	71.81
Os02t0194700-01	Rice	plasma membrane	71.24	70.09
CDY61034	Canola	cytosol	30.74	62.64
CDY07409	Canola	cytosol	26.56	62.53
VIT_13s0064g01500.t01	Wine grape	cytosol	16.9	61.6
Solyc01g009680.2.1	Tomato	plastid	29.86	61.4
CDY72550	Canola	cytosol	21.62	61.37
VIT_13s0064g01490.t01	Wine grape	cytosol	26.67	60.9
CDY70843	Canola	cytosol	8.12	58.73
PGSC0003DMT400020118	Potato	cytosol	44.13	58.01
VIT_06s0004g01480.t01	Wine grape	cytosol	49.62	57.0
VIT_06s0004g01500.t01	Wine grape	cytosol	49.29	56.76
VIT_13s0064g01480.t01	Wine grape	plastid	56.2	56.7
KRH29669	Soybean	plastid	55.1	55.72
KRH29668	Soybean	nucleus	55.32	55.63
KRH24671	Soybean	cytosol, plastid	55.32	55.14
Solyc01g006540.2.1	Tomato	plastid	54.12	55.02
PGSC0003DMT400081909	Potato	plastid	54.23	54.95
CDY61881	Canola	cytosol	21.41	54.93
VIT_06s0004g01510.t01	Wine grape	plastid	54.23	54.83
VIT_06s0004g01460.t01	Wine grape	plastid	34.91	53.18
Solyc01g006560.2.1	Tomato	plastid	52.03	52.55
KRG89889	Soybean	cytosol, plastid	49.4	52.33
CDX91565	Canola	plastid	51.48	52.11
VIT_06s0004g01470.t01	Wine grape	cytosol	51.48	51.94
KRG89883	Soybean	cytosol, plastid	48.85	51.8
Zm00001d031449_P001	Maize	mitochondrion	53.9	51.36
CDY04196	Canola	plastid	50.05	51.29
CDX67920	Canola	plastid	50.82	51.22
Solyc12g011040.1.1	Tomato	nucleus, plastid	50.05	51.12
Bra003526.1-P	Field mustard	plastid	50.71	51.11
CDX79416	Canola	plastid	50.38	50.77
Bra004059.1-P	Field mustard	plastid	48.19	50.69
AT3G45140.1	Thale cress	plastid	49.84	50.67
KRH17965	Soybean	plastid	50.93	50.54
Bra004057.1-P	Field mustard	cytosol	49.4	50.51
CDY61036	Canola	plastid	49.18	50.39
Bra004060.1-P	Field mustard	plastid	49.62	50.28
KRG89888	Soybean	nucleus	49.62	50.06
KRH18682	Soybean	cytosol, mitochondrion	50.05	50.05
Bra022535.1-P	Field mustard	plastid	44.46	49.94
CDY16339	Canola	plastid	41.71	49.93
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	46.43	49.24
CDY61880	Canola	plastid	27.77	45.92
Bra004058.1-P	Field mustard	plastid	50.27	43.29
CDY07407	Canola	cytosol, plastid	50.82	42.21
Zm00001d033623_P003	Maize	cytosol	38.86	40.83
Zm00001d025524_P001	Maize	plastid	41.38	40.58
CDY07408	Canola	plastid	20.31	40.39
Zm00001d003533_P001	Maize	plastid	41.71	40.38
CDY70245	Canola	plastid	20.2	40.17
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	38.86	39.91
Zm00001d041204_P001	Maize	cytosol	37.21	39.88
Zm00001d033624_P001	Maize	cytosol	38.64	39.68
Zm00001d042540_P008	Maize	cytosol	38.31	39.13
Zm00001d027893_P001	Maize	plastid	41.49	39.05
Zm00001d042541_P002	Maize	cytosol	37.65	38.8
CDY70606	Canola	plastid	16.68	38.48
CDY61882	Canola	plastid	15.92	37.47
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	34.14	34.4

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
ProteinID:ABF01002.1	ProteinID:AQK69664.1	ProteinID:AQK69667.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	UniProt:Q06XS2
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0000E2CFEC	EnsemblPlantsGene:Zm00001d015852	EnsemblPlants:Zm00001d015852_P004
EnsemblPlants:Zm00001d015852_T004	SEG:seg	:	:	:	:

Description

lipoxygenase11 lipoxygenase11

Coordinates

chr5:+:126372618..126376084

Molecular Weight (calculated)

102877.0 Da

IEP (calculated)

7.036

GRAVY (calculated)

-0.395

Length

911 amino acids

Sequence
(BLAST)

001: MIQMNMKQPL VLPAHRGNVI GSRLASSPSP VAAAAAAASR RRGVVSSPRS RLQRHMRLPR ISCSATEEAS GAVSAVTVEK MLTVTASVQA APAIGQMYFQ
101: RALDDAGDFF GKTLLMELVS SEVDAKTGLE KPRVTAFAHK TLREGHYEAE FKVPASFGPV GAVLLENEHH KEIFIREIKL VTGSDSSTAV TFGCNSWVHS
201: KFDNPEKRIF FTLKSYLPSD TPKGLEDLRK KDLQALRGDG HGERKASERV YDYDVYNDLG DPDKNPAHQR PVLGGSKRYP YPRRCRTGRP RTRKDPEAEV
301: RHGHNYVPRD EQFSEVKQLT FGATTLRSGL HALLPAIRPM LIKRELRFPH FPAIDDLYSD GIPLPAQTGL GAIRSIVPRV VKLVEDTTEH VLRFELPDMI
401: ERDRFSWFKD EEFARQTIAG LNPLCIQLLT EFPIRSKLDP EVYGPAESAI TKEILEKHMS GGAAMTVEQA LAAKRLFILD YHDVFLPYVH RVRELPDTTL
501: YGSRTVFFLT DLGTLMPLAI ELVRPKSPTQ PQWKRVFTHG PDATDAWLWK LAKAHVVTHD TGYHQLVSHW LRTHCCVEPY IIAANRQLSR LHPVYRLLHP
601: HFRYTMEINA LAREALINAD GIIEESFWPG RYAVELSSAA YGATWQFDTE ALPNDLVKRG LAVRRDDGEL ELTIKDYPYA HDGLMVWNTI RQWAADYVNV
701: YYKSDEAVAA DPELKAFWDE VRNVGHGDKK DEPWWPVLDT RDSLAETLTT IMWVTSGHHS AVNFGQYHFG GYFPNRPTTI RKSMPVEEEA GRDEEMKKFL
801: KQPETTLLDM LPTQMQAIRV MTTLDILSSH SPDEEYMGEL AEPSWLEEPM VKAAFEKFGG RMKEIEGFID ECNNNPELRN RCGAGIVPYE LLKPFSKPGV
901: TGRGIPNSIS I

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.