CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70795
CDX74645
CDX78777
CDX84118
CDY02645
CDY06456
CDY33686
CDY38487
CDY38545
CDY45630
CDY49143
CDY49364
CDY53257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	CDX70795	AT5G18110.1	11117257
AT3G45140.1	CDX78777	AT5G18110.1	11117257
AT3G45140.1	CDY02645	AT5G18110.1	11117257
AT3G45140.1	CDY38487	AT5G18110.1	11117257
AT3G45140.1	CDY45630	AT5G18110.1	11117257
AT3G45140.1	CDY49143	AT5G18110.1	11117257
AT3G45140.1	CDY53257	AT5G18110.1	11117257
AT3G45140.1	CDX74645	AT5G35620.1	11117257
AT3G45140.1	CDX84118	AT5G35620.1	11117257
AT3G45140.1	CDY06456	AT5G35620.1	11117257
AT3G45140.1	CDY33686	AT5G35620.1	11117257
AT3G45140.1	CDY38545	AT5G35620.1	11117257
AT3G45140.1	CDY49364	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07408	Canola	plastid	90.83	90.83
CDY70606	Canola	plastid	76.2	88.35
CDY61882	Canola	plastid	74.45	88.11
CDY61880	Canola	plastid	91.05	75.68
CDY04196	Canola	plastid	89.74	46.23
CDY16339	Canola	plastid	72.05	43.36
CDY61036	Canola	plastid	79.91	41.17
CDY07407	Canola	cytosol, plastid	96.51	40.29
CDX91565	Canola	plastid	71.83	36.56
CDX67920	Canola	plastid	72.05	36.5
CDX79416	Canola	plastid	72.05	36.5
AT3G45140.1	Thale cress	plastid	67.03	34.26
VIT_13s0064g01490.t01	Wine grape	cytosol	26.64	30.58
GSMUA_Achr9P12470_001	Banana	plastid	44.1	23.96
KRH29669	Soybean	plastid	46.94	23.86
GSMUA_Achr3P11780_001	Banana	plastid	43.67	23.64
VIT_13s0064g01480.t01	Wine grape	plastid	45.41	23.03
PGSC0003DMT400081909	Potato	plastid	44.98	22.91
Solyc01g006540.2.1	Tomato	plastid	43.01	21.99
KRG89883	Soybean	cytosol, plastid	40.83	21.77
Solyc01g006560.2.1	Tomato	plastid	42.58	21.62
KRH29668	Soybean	nucleus	41.7	21.08
KRH24671	Soybean	cytosol, plastid	41.92	21.01
Os08t0508800-01	Rice	nucleus, plasma membrane	42.14	20.89
Os08t0509100-01	Rice	nucleus	42.36	20.62
KRG89889	Soybean	cytosol, plastid	38.65	20.58
OQU80925	Sorghum	cytosol	38.86	20.58
Zm00001d053675_P001	Maize	plastid	40.61	20.55
Solyc12g011040.1.1	Tomato	nucleus, plastid	39.96	20.52
KRG89888	Soybean	nucleus	40.39	20.49
Os02t0194700-01	Rice	plasma membrane	41.05	20.3
Zm00001d015852_P004	Maize	plastid	40.17	20.2
KXG29701	Sorghum	plastid	40.17	20.07
KRH18682	Soybean	cytosol, mitochondrion	39.3	19.76
HORVU6Hr1G033600.1	Barley	plastid	38.65	19.75
KRH17965	Soybean	plastid	39.3	19.61
TraesCS6D01G154600.1	Wheat	plastid	37.77	19.2
TraesCS6A01G166000.1	Wheat	golgi	37.77	19.2
TraesCS6B01G193400.1	Wheat	plastid	37.77	19.2
TraesCS7A01G246200.1	Wheat	plastid	38.86	19.12
TraesCS7D01G244800.1	Wheat	plastid	38.86	19.1
TraesCS4D01G347300.1	Wheat	cytosol	36.9	19.1
TraesCS7B01G145200.1	Wheat	plastid	38.43	18.97
Zm00001d031449_P001	Maize	mitochondrion	39.52	18.93
PGSC0003DMT400020118	Potato	cytosol	27.95	18.47
HORVU7Hr1G050680.1	Barley	peroxisome	27.29	18.27
TraesCS5D01G013400.1	Wheat	plastid	36.68	18.1
TraesCS5A01G007900.1	Wheat	plastid	36.68	18.1
CDX82146	Canola	plastid	33.41	18.0
TraesCS5B01G006500.1	Wheat	plastid	36.46	18.0
HORVU5Hr1G001180.1	Barley	plastid	36.46	17.94
HORVU6Hr1G000510.1	Barley	plastid	36.24	17.81
CDX81825	Canola	cytosol	34.5	17.19
CDY21750	Canola	cytosol, mitochondrion, plastid	34.28	17.08
TraesCS6D01G010100.1	Wheat	plastid	34.5	16.83
CDY64617	Canola	cytosol	33.41	16.65
HORVU7Hr1G006320.4	Barley	plastid	33.62	16.61
Os12t0559200-01	Rice	plastid	33.41	16.59
CDX96769	Canola	cytosol	33.19	16.54
CDY49853	Canola	plastid	33.19	16.54
CDY07417	Canola	plastid	32.53	16.23
CDY38326	Canola	cytosol	31.22	16.12
TraesCS5D01G041100.1	Wheat	plastid	33.19	16.08
TraesCS5B01G033000.1	Wheat	plastid	32.97	15.89
CDY46325	Canola	cytosol	30.57	15.87
CDY12655	Canola	plastid	31.44	15.77
TraesCS5A01G032800.1	Wheat	mitochondrion	29.48	15.72
CDY51606	Canola	plastid	31.22	15.66
CDY64191	Canola	cytosol	30.79	15.55
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	32.53	13.3
CDY43490	Canola	cytosol, plasma membrane	33.41	12.72
HORVU3Hr1G047210.1	Barley	cytosol	5.02	10.6
TraesCS6B01G014400.1	Wheat	cytosol	10.7	8.15
CDY70916	Canola	cytosol	7.64	6.94
CDY61881	Canola	cytosol	4.15	5.35
CDY61034	Canola	cytosol	4.15	4.25
Os12t0559934-00	Rice	cytosol	1.53	3.59
TraesCS7A01G034900.1	Wheat	mitochondrion	1.53	2.39
CDY72550	Canola	cytosol	1.09	1.56
CDY07409	Canola	cytosol	1.31	1.55
Solyc01g009680.2.1	Tomato	plastid	1.09	1.13
TraesCS7D01G029400.1	Wheat	cytosol	0.0	0.0
VIT_13s0064g01500.t01	Wine grape	cytosol	0.0	0.0
CDY70843	Canola	cytosol	0.0	0.0
Os12t0560200-00	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12	GO:A0A078JUW0
UniProt:A0A078JUW0	EnsemblPlants:CDY70245	ProteinID:CDY70245	ProteinID:CDY70245.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016702
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00097608001	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00468	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniPathway:UPA00382	UniParc:UPI0004EED1B7	SEG:seg	:	:	:

Description

BnaCnng67400DBnaCnng67400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUW0]

Coordinates

chrLK041583:-:83..2340

Molecular Weight (calculated)

51862.2 Da

IEP (calculated)

6.218

GRAVY (calculated)

-0.391

Length

458 amino acids

Sequence
(BLAST)

001: MFCKEASSGL QTLNIAKSLS SEFTKPSALI NPLSVGHRYK LCPRPNLRGR CTVTASKFDF DWITKERVKK IKVKGIITAK QGLLPSVGFT DLLGISLLVE
101: LISAETDPRT LMEKDPVKDH ARRLVIDAHG EDQYECVFDM PEDFGAVGAI RVLNEAHREI FLKEMKLELP DGPVTFTCNS WLASKSDDPT KRTFFSNKSY
201: LPLQTPEPLK QLRKEELETL QGKNRKHSGE FEKFERVYDY DVYNDVGDPD KDPELARPVI GGLSHPYPRR CKTGRKPSRK YPSIETRKGE FYVPRDEEFT
301: TIKGAAFTGK AVLAALPAVF PQIEAALVDP NMPFPHFKSI EDLFEEGIEL PKDAGLFPVI PRLVKAAAEA DDILQFESPS LLDKDRFSWI RDDEFARQTL
401: AGLNPYCIQL VQEWPLKSKL DPAVYGDPNS LITSEIVERE IKAVMSFDEV KLINIYRF

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.