CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07417	Canola	plastid	79.73	97.28
CDY51606	Canola	plastid	73.57	90.25
CDY12655	Canola	plastid	73.57	90.25
AT1G67560.1	Thale cress	plastid	70.45	86.04
PGSC0003DMT400034472	Potato	cytosol	29.38	73.6
KRH42646	Soybean	plastid	52.86	64.28
VIT_01s0010g02750.t01	Wine grape	plastid	52.59	64.02
Solyc05g014790.2.1	Tomato	plastid	50.71	62.35
PGSC0003DMT400045047	Potato	cytosol, plastid	50.09	61.65
GSMUA_Achr6P28450_001	Banana	plastid	45.0	57.93
CDY72550	Canola	cytosol	15.36	53.58
CDY61034	Canola	cytosol	21.34	53.47
CDY07409	Canola	cytosol	18.39	53.23
CDY70916	Canola	cytosol	23.12	51.39
CDY61881	Canola	cytosol	15.89	50.14
CDY64617	Canola	cytosol	39.55	48.2
CDX96769	Canola	cytosol	39.46	48.1
CDY21750	Canola	cytosol, mitochondrion, plastid	39.46	48.1
CDX81825	Canola	cytosol	39.2	47.77
CDX82146	Canola	plastid	35.98	47.41
CDY49853	Canola	plastid	38.84	47.33
CDY04196	Canola	plastid	34.46	43.42
CDX91565	Canola	plastid	34.46	42.89
CDY61036	Canola	plastid	34.02	42.86
CDX79416	Canola	plastid	34.55	42.81
CDX67920	Canola	plastid	34.46	42.7
CDY16339	Canola	plastid	28.93	42.58
CDY70843	Canola	cytosol	4.55	40.48
CDY46325	Canola	cytosol	30.8	39.12
CDY38326	Canola	cytosol	30.45	38.44
CDY64191	Canola	cytosol	30.54	37.71
CDY61880	Canola	plastid	17.68	35.93
CDY07407	Canola	cytosol, plastid	34.64	35.37
CDY70245	Canola	plastid	13.3	32.53
CDY07408	Canola	plastid	13.04	31.88
CDY70606	Canola	plastid	10.89	30.89
CDY43490	Canola	cytosol, plasma membrane	32.41	30.17
CDY61882	Canola	plastid	10.0	28.94

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.300.12	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	GO:A0A078GUR7	UniProt:A0A078GUR7	EnsemblPlants:CDY28879	ProteinID:CDY28879	ProteinID:CDY28879.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872
GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00041561001	InterPro:HesB-like_dom_sf	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:IPR035903	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF60	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	SUPFAM:SSF89360
TMHMM:TMhelix	UniPathway:UPA00382	UniParc:UPI0004EF00BF	SEG:seg	:	:

Description

BnaC06g26670DLipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A078GUR7]

Coordinates

chrLK032227:-:320784..327982

Molecular Weight (calculated)

127672.0 Da

IEP (calculated)

6.494

GRAVY (calculated)

-0.505

Length

1120 amino acids

Sequence
(BLAST)

0001: MLHSVMVQTR NLIRDEVLGA ISDDDDDSPS GKRSKLDRFP LSRWELAVSL GVFLVFSSSL FCIYITMPAA KSGKLKLPRS ISDLRLLNFI SGNFIYWSMV
0101: RPTYDEDDGD EDAEIIVNGD EESDEEEEDD VDHVMDKMSI TPKHSFMNEM ERDRLLEMPS VSRLCLRIDV KQEGCSGMSY TMEFENKSNA RPDDSTIEYQ
0201: GFAIASPVKT NFYGVSLVRS PAFPVLPRRL QHRVSLSRQV RAVISREEKA VDQEDEKSKN RSVVYSSSSP AFPWQRSKYT GTKTVMAVVK IRKKMREKLT
0301: ERLGHQFELL MKAVGQGMLI QLVSEDIDPE TGSGRRSLET PVLGLPKARN DPRNLEFTAT FTVPTDFGKP GAILVTNLLS SEICLSEIII RDGSDTILFP
0401: GNTWIHSRND NPDGRIIFRS QPCLPSHTPA GIKELREKDL RSVRGNGKGD RKPHERIYDY DVYNDLGDPR KKDRVRPILG GPEMPYPRRC RSGRPLVSKN
0501: PPCESRGKDK EEFYVPRDEE FEDIKRDTFT AGRLKALFHN LVPSIAAALS NLDIPFTCFS DIDKLYKCDI VLRPTEPKDT GLGGFFGSFV DGILNVGETL
0601: LKYDTPAVIK SDRFAWLRDN EFGRQALAGV NPVNIELLKE LPIRSKLDPA VYGPQESALT EEVIAKEVQH YGMTLEQAFE EKRLFLLDYH DMLLPFVDKI
0701: NSLKDDPRKT YASRTIFFYS KAGALRPLAI ELSLPPTPDN DNKFVYVHGH DATTHWMWKL AKAHVCSNDA GVHQLVNHWL RTHASMEPYI IATNRQLSTM
0801: HPVYKLLHPH MRYTLEINAR ARKSLINGGG IIESCFTPGK YSMELSSAAY KNMWRFDMEG LPADLVRRGM AEEDASEECG VKLVIEDYPY AADGLLIWKA
0901: IKNLVESYVK HFYSDPKSIA SDFELQAWWD EIKNKGHYDK KDEPWWPKLN TTQDLSEILT NMIWIASGQH AAINFGQYPF GGYVPNRPTL LRKLIPHEND
1001: PEYEMFMRNP QYSFLSSLAT QLQATKVMAV QETLSTHSAD EEYLIDLKEN QRRWFQDEEV VKYFSKFSEE LEEVEKKINK RNKDKKLKNR TGAGMPPYEL
1101: LLPTSPHGVT GRGIPNSISI

Best Arabidopsis Sequence Match ( AT1G67560.1 )
(BLAST)

001: MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF
101: EHQLELFMKA IGQGMLIQLV SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI CLSEIIIEDS TDTILFPANT
201: WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC
301: ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY
401: DTPAVIKWDR FAWLRDNEFG RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR LFLVDYHDIL LPFVEKINSI
501: KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV
601: YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD
701: LVESYVKHFY SDSKSITSDL ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY VPNRPTLLRK LIPQETDPDY
801: EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP
901: TSPHGVTGRG IPNSISI

Arabidopsis Description

LOX6Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1Z8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.