Factsheet for GSMUA_Achr6P28450_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034472	Potato	cytosol	33.68	65.55
VIT_01s0010g02750.t01	Wine grape	plastid	68.51	64.78
KRH42646	Soybean	plastid	67.7	63.95
PGSC0003DMT400045047	Potato	cytosol, plastid	63.68	60.88
Solyc05g014790.2.1	Tomato	plastid	63.56	60.7
CDY12655	Canola	plastid	58.85	56.08
CDY51606	Canola	plastid	58.74	55.97
Bra033991.1-P	Field mustard	plastid	58.62	55.86
Bra004081.1-P	Field mustard	plastid	58.74	55.66
CDY07417	Canola	plastid	58.74	55.66
AT1G67560.1	Thale cress	plastid	58.28	55.29
GSMUA_Achr8P22700_001	Banana	plastid	47.93	49.17
GSMUA_Achr9P16020_001	Banana	plastid	48.85	48.52
GSMUA_Achr3P07870_001	Banana	plastid	48.97	48.46
GSMUA_Achr10P...	Banana	cytosol	48.97	48.41
GSMUA_Achr9P12470_001	Banana	plastid	44.94	46.38
GSMUA_Achr3P11780_001	Banana	plastid	44.94	46.22
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	57.93	45.0
GSMUA_Achr1P22970_001	Banana	cytosol	39.43	40.54
GSMUA_AchrUn_...	Banana	cytosol	35.86	39.8
GSMUA_AchrUn_...	Banana	cytosol	38.74	39.42
GSMUA_Achr1P24370_001	Banana	cytosol	38.05	39.08
GSMUA_Achr2P05850_001	Banana	cytosol	36.32	38.4
GSMUA_Achr6P25110_001	Banana	cytosol	34.48	37.78
GSMUA_Achr6P25090_001	Banana	cytosol	36.32	37.71
GSMUA_Achr9P19250_001	Banana	plasma membrane	40.0	36.59
GSMUA_Achr6P25080_001	Banana	cytosol	30.11	33.81
GSMUA_Achr6P25100_001	Banana	cytosol	29.89	2.16

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006629	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009611
GO:GO:0009695	GO:GO:0009987	GO:GO:0016020	GO:GO:0016165	GO:GO:0016491	GO:GO:0016702
GO:GO:0034440	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G28450_001	EnsemblPlants:GSMUA_Achr6P28450_001
EnsemblPlants:GSMUA_Achr6T28450_001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M0TAZ0	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF60	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI0002953E25	SEG:seg	:	:	:

Description

Lipoxygenase 6, choloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G28450_001]

Coordinates

chr6:-:28832609..28839123

Molecular Weight (calculated)

97875.1 Da

IEP (calculated)

8.016

GRAVY (calculated)

-0.338

Length

870 amino acids

Sequence
(BLAST)

001: MLSAKSTSFF PAIAPQLDAG RSSRTRLVNL GSCRRSIASR TVRAVISSDD KSVGTLPSQP AAVGVALRAA APPGDSIDVR VVLTVRNRIK EKLVSKIGDQ
101: LEYFVNGIGQ GITVQLVSEE IDPDSESGKR SAEVAVRGFL PRSSNHPSLV EYAANFTVPS GFGRPGAICI TNLHRKEFYL VEIVVHGLND GPFFFPANTW
201: IHTRNDNPQS RIIFSNQAYL PSQTPDGLKN IRQDILLGLR GNGKGERKKF EMIYDYALYN DLGNPDKDPD VARPVLGGSK RPYPRRCRTG RPPTKSDLSA
301: ESRVEKPHSV YVPRDETFEE IKQNTFSAGA LKALFHNLIP ALMAALSSSD SQFECFSDID RLYKDGLLIK SEEQKLTQKL LLPTVLGNLL SMGEKLMKYD
401: IPSIISRDRF SWLRDNEFAR QTLAGVNPVD IQRLREFPIR SKLDPETYGS PESAITKECL EHELNGMSLQ EAMDNDRLFI IDYHDILLPY VKKINSLKER
501: KMYASRTVLF YTRSGILRPI AIELSLPSTP SASRKRVYTH GHDATTNWIW KLAKAHACAN DAGVHQLVNH WLRTHAAMEP YIIATHRQLS SMHPIFMLLH
601: PHMRYTLEIN ALARQSLING GGIIENCFSP GKYSMELSSA AYKSLWRFDM EALPADLIRR GMAIEDPSMP CGVKLVIEDY PYAADGLLVW SAIEDWVKDY
701: VTHYYSDDSS VTSDVELQAW WDEIKNKGHP DKRNEPWWPN LNTKEDLIHI LTIIKFLLNP QYMFLSALPS QLQATQIMAV QDTLSTHSPD EEYLGQVIES
801: HAHWTNNRHI ASCFEKFSAR LEEIEEIINR RNKNFYLKNR SGAGVPPYEL LLPLSGPGVT GRGIPNSISI

Best Arabidopsis Sequence Match ( AT1G67560.1 )
(BLAST)

001: MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF
101: EHQLELFMKA IGQGMLIQLV SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI CLSEIIIEDS TDTILFPANT
201: WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC
301: ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY
401: DTPAVIKWDR FAWLRDNEFG RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR LFLVDYHDIL LPFVEKINSI
501: KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV
601: YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD
701: LVESYVKHFY SDSKSITSDL ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY VPNRPTLLRK LIPQETDPDY
801: EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP
901: TSPHGVTGRG IPNSISI

Arabidopsis Description

LOX6Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1Z8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.