Factsheet for PGSC0003DMT400034472

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045047	Potato	cytosol, plastid	98.21	48.24
Solyc05g014790.2.1	Tomato	plastid	97.09	47.64
PGSC0003DMT400074322	Potato	cytosol	45.19	45.7
PGSC0003DMT400063654	Potato	cytosol	47.65	43.38
VIT_01s0010g02750.t01	Wine grape	plastid	80.76	39.24
KRH42646	Soybean	plastid	80.09	38.87
Bra033991.1-P	Field mustard	plastid	73.83	36.14
CDY12655	Canola	plastid	73.6	36.03
CDY51606	Canola	plastid	73.6	36.03
PGSC0003DMT400020118	Potato	cytosol	55.7	35.93
CDY07417	Canola	plastid	73.6	35.84
Bra004081.1-P	Field mustard	plastid	73.38	35.73
AT1G67560.1	Thale cress	plastid	72.26	35.22
GSMUA_Achr6P28450_001	Banana	plastid	65.55	33.68
PGSC0003DMT400058933	Potato	plastid	62.86	30.74
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	73.6	29.38
PGSC0003DMT400081909	Potato	plastid	57.05	28.36
PGSC0003DMT400063469	Potato	cytosol	50.11	26.57
PGSC0003DMT400063446	Potato	cytosol	47.2	26.24
PGSC0003DMT400063477	Potato	cytosol	49.66	25.93
PGSC0003DMT400028158	Potato	cytosol	49.89	25.87
PGSC0003DMT400054145	Potato	cytosol	49.22	25.64
PGSC0003DMT400081370	Potato	cytosol	46.98	23.95
PGSC0003DMT400063452	Potato	cytosol	40.72	22.78
PGSC0003DMT400063461	Potato	cytosol	30.2	19.45
PGSC0003DMT400074324	Potato	cytosol	0.22	0.29

Protein Annotations

Gene3D:1.20.245.10	Gene3D:3.10.450.60	MapMan:50.1.12	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR013819	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	UniProt:M1B0R2	PFAM:PF00305	EnsemblPlantsGene:PGSC0003DMG400013248	PGSC:PGSC0003DMG400013248
EnsemblPlants:PGSC0003DMT400034472	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF60	SUPFAM:SSF48484	UniParc:UPI0002968E6F	:	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400013248]

Coordinates

chr11:-:1060172..1064952

Molecular Weight (calculated)

50964.3 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.291

Length

447 amino acids

Sequence
(BLAST)

001: MSVEEAIQDK RLFILDYHDM LLPFIGKMNS LPGRKAYASR TLFFYTSRGV LKPIVVELSL PPIPSSPRNK RIFSHGQDAT NHWIWNLAKA HVCSNDAGVH
101: QLVNHWLRTH ACMEPYIIAT HRHLSSMHPI YKLLHPHMRY TLEINALARQ SLINGGGVIE ACFSPGRYSM EISSAAYKSM WRFDMEALPA DLLRRGMAVE
201: DTSMPLGVKL VIEDYPYAAD GLLIWSAIKE YVESYVDHYY SEPNSVTSDV ELQGWWNEIK NKGHVDKKNE PWWPKLVTKE DLSGILTTMI WTASAQHAAI
301: NFGQYPFGGY VPNRPTLMRK LIPHEDDPSY ENFILHPEYT FLASLPTQLQ ATKVMAVQDT LSTHSADEEY MYQLHEIQLF SVNDHEVLKI LKRFSAKLKE
401: IEDTINQRNK DIRLKNRSGA GVPPYELLLP TSGPGVTCRG IPNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.