CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034472	Potato	cytosol	38.87	80.09
VIT_01s0010g02750.t01	Wine grape	plastid	74.81	74.89
PGSC0003DMT400045047	Potato	cytosol, plastid	69.49	70.33
Solyc05g014790.2.1	Tomato	plastid	69.38	70.14
GSMUA_Achr6P28450_001	Banana	plastid	63.95	67.7
CDY12655	Canola	plastid	63.84	64.4
CDY07417	Canola	plastid	64.17	64.38
CDY51606	Canola	plastid	63.74	64.29
Bra033991.1-P	Field mustard	plastid	63.63	64.18
Bra004081.1-P	Field mustard	plastid	63.95	64.16
AT1G67560.1	Thale cress	plastid	63.41	63.69
KRH47615	Soybean	nucleus	53.75	53.4
KRH06197	Soybean	nucleus	53.42	53.36
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	64.28	52.86
KRH69027	Soybean	plastid	51.68	52.83
KRG97300	Soybean	plastid	51.14	52.39
KRH10882	Soybean	cytosol	24.32	51.61
KRH35534	Soybean	cytosol	24.43	50.22
KRH30640	Soybean	cytosol	9.99	49.2
KRH29668	Soybean	nucleus	47.34	48.12
KRH24671	Soybean	cytosol, plastid	47.67	48.03
KRH16725	Soybean	cytosol	11.94	47.62
KRG89889	Soybean	cytosol, plastid	44.08	47.21
KRH29669	Soybean	plastid	46.15	47.17
KRG89888	Soybean	nucleus	45.93	46.84
KRG89883	Soybean	cytosol, plastid	43.32	46.45
KRH17965	Soybean	plastid	46.04	46.19
KRH50048	Soybean	cytosol	45.17	45.71
KRH21441	Soybean	cytosol	45.06	45.6
KRH57987	Soybean	cytosol	12.7	45.35
KRH62399	Soybean	cytosol, endoplasmic reticulum	11.62	45.34
KRH18682	Soybean	cytosol, mitochondrion	44.41	44.9
KRH68548	Soybean	cytosol	41.8	44.87
KRH13357	Soybean	endoplasmic reticulum	11.73	44.63
KRH44093	Soybean	endoplasmic reticulum	40.93	44.56
KRH47522	Soybean	endoplasmic reticulum, nucleus	41.8	44.51
KRH10050	Soybean	endoplasmic reticulum	41.15	44.22
KRH44095	Soybean	endoplasmic reticulum	41.37	44.0
KRH23268	Soybean	endoplasmic reticulum	40.5	43.73
KRH10053	Soybean	endoplasmic reticulum	40.5	43.73
KRH47525	Soybean	endoplasmic reticulum	41.15	43.66
KRH62403	Soybean	cytosol, endoplasmic reticulum	10.75	43.61
KRH44090	Soybean	endoplasmic reticulum	40.72	43.6
KRH10051	Soybean	endoplasmic reticulum, nucleus	40.5	43.57
KRH44094	Soybean	endoplasmic reticulum	40.93	43.48
KRH23266	Soybean	cytosol	38.98	43.46
KRH47067	Soybean	endoplasmic reticulum	40.72	43.4
KRH33939	Soybean	cytosol, endoplasmic reticulum	40.28	42.89
KRH47069	Soybean	endoplasmic reticulum	21.17	42.86
KRH47066	Soybean	endoplasmic reticulum, nucleus	39.96	42.84
KRH23265	Soybean	endoplasmic reticulum, nucleus	40.17	42.73
KRG91271	Soybean	cytosol	39.52	42.42
KRH44097	Soybean	cytosol, endoplasmic reticulum	39.74	42.17
KRH23269	Soybean	endoplasmic reticulum	37.35	41.85
KRH44092	Soybean	nucleus	38.55	41.42
KRH47064	Soybean	endoplasmic reticulum	24.1	38.95
KRH66214	Soybean	cytosol	36.48	38.8
KRH07345	Soybean	cytosol, plastid	36.16	38.68
KRG88464	Soybean	cytosol	17.16	34.65

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100814410	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02004822	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G102900	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0006629	GO:GO:0006633	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009611	GO:GO:0009695	GO:GO:0009987
GO:GO:0016020	GO:GO:0016165	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0034440
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	UniProt:I1KS01	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	EnsemblPlants:KRH42646	ProteinID:KRH42646	ProteinID:KRH42646.1	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF60	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002338C7F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:7885947..7891111

Molecular Weight (calculated)

103678.0 Da

IEP (calculated)

8.099

GRAVY (calculated)

-0.412

Length

921 amino acids

Sequence
(BLAST)

001: MLALKPLPSD LSLRPSPATL AINRRRRIQF PASVRRSVDV KAAVSGGDKS QTTSTTTTSP SLDSKERKGK SSVASSGSGI DEEGIQVKAV VTIRKKMKEN
101: ITEKLGDQWE NMVNGFGQGI QIQLISEEIH PVTNSGKSVQ SYVRGWLPKP SNVAYIVEYS AEFSVPSDFG CPGAVLVTNL HGKEFYLVEI IVHGFSGGPI
201: FFPANTWIHS RNDNPETRII FKNKAYLPSQ TPAGIKDLRR EDLLSIRGTQ HGQRKQHDRI YDYATYNDLG NPDKDEELAR PVLGGHEMPY PRRCRTGRPP
301: TLSDPLSESR IEKPHPVYVP RDETFEEIKQ DTFSAGRLKA LFHNLLPSLA ATLSSSDVPF KCFSDIDKLY IDGVVLRDEE QKGVMENLLV GKVMKQVLSA
401: GESLLKYEIP AVIKGDKFCW LRDNEFARQT LAGVNPVNIE LLKEFPIRSK LDPSLYGPSE SAITKELLEQ ELGGMNLEQA IEEKRLFILD YHDMLLPFIK
501: KMNSLPGRKA YASRTILFNT KTGILRPIAI ELSLPQTHSS PQNKRIYTQG HDATTHWIWK LAKAHVCSND AGIHQLVNHW LRTHACMEPY IIATRRQLSS
601: MHPIYKLLHP HMRYTLEINA LARQNLINGG GIIEASFSPG KYAMELSSAA YKKLWRFDME SLPADLIRRG MAVDDPSMPC GVKLVIDDYP YAADGLLIWS
701: AIKEWVESYV AHFYSDPNSV TSDVELQAWW REIKLKGHSD KKNEPWWPKL DTKEDLSGIL TTMIWIASGQ HAAINFGQYP FGGYVPNRPT LMRKLIPQEN
801: DPDYEKFIQN PQLVFLSSLP TQLQATKVMA VQDTLSTHSP DEEYLGQLKP LQNHWINDHE IMELFNKFSA RLEEIEEIIN ARNKDPRLRN RSGAGVPPYE
901: LLLPSSGPGV TGRGIPNSIS I

Best Arabidopsis Sequence Match ( AT1G67560.1 )
(BLAST)

001: MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF
101: EHQLELFMKA IGQGMLIQLV SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI CLSEIIIEDS TDTILFPANT
201: WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC
301: ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY
401: DTPAVIKWDR FAWLRDNEFG RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR LFLVDYHDIL LPFVEKINSI
501: KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV
601: YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD
701: LVESYVKHFY SDSKSITSDL ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY VPNRPTLLRK LIPQETDPDY
801: EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP
901: TSPHGVTGRG IPNSISI

Arabidopsis Description

LOX6Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1Z8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.